Locus 7862

Sequence ID X_DroMel_CAF1
Location 19,583,109 – 19,583,209
Length 100
Max. P 0.567850
window12900

overview

Window 0

Location 19,583,109 – 19,583,209
Length 100
Sequences 6
Columns 103
Reading direction forward
Mean pairwise identity 81.72
Mean single sequence MFE -35.71
Consensus MFE -25.45
Energy contribution -26.67
Covariance contribution 1.21
Combinations/Pair 1.33
Mean z-score -1.37
Structure conservation index 0.71
SVM decision value 0.07
SVM RNA-class probability 0.567850
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 19583109 100 + 22224390
CGAGUCCCCAUUCGCAGCGAACCGCAAGGCCGGUGCCAG---CGGCGCCGGCAAACAGGACUCGAACUGCCGCACCUGCAACGAUUUCAAGUCGUGGUCCAAG
(((((((.........(((...)))...(((((((((..---.))))))))).....)))))))....(((((....)).(((((.....))))))))..... ( -41.50)
>DroSec_CAF1 3034 100 + 1
GGAGUCCCCAUUCGCAGCGCACCGCAAGGCCGGUGCCAG---CGGUGCCGGCAAACAGGACUCGAACUGCCGCACCUGCAACGAUUUCAAGUCGUGGUCCAAG
.((((((......((.(.(((((((..(((....))).)---))))))).)).....)))))).....(((((....)).(((((.....))))))))..... ( -38.00)
>DroSim_CAF1 3604 100 + 1
GGAGUCCCCAUUCGCAGCGCACCGCAAGGCCGGUGCCAG---CGGUGCCGGCAAACAGGACUCGAACUGCCGCACCUGCAACGAUUUCAAGUCGUGGUCCAAG
.((((((......((.(.(((((((..(((....))).)---))))))).)).....)))))).....(((((....)).(((((.....))))))))..... ( -38.00)
>DroEre_CAF1 2980 97 + 1
GGAGUCCCCAUUCUCGGCAAACCGAAAGGCCGGCGG------CAGCACCGGCAAACAGGACUCAAACUGUCGCACUUGCAAUGAUUUCAAGUCCUGGUCCAAG
(((..........((((....))))...(((((.(.------...).)))))...(((((((.(((..((.((....)).))..)))..))))))).)))... ( -30.20)
>DroYak_CAF1 2867 103 + 1
GGAGUUUCCAUUCGCGGCGAACCGCAAGGCUGGCGCUAACGCCGGCGCCGGCAAACAGGACUCCAACUGCCGCACUUGCAAUGAUUUCAAGUCCUGGUCCAAG
(((..........((((....))))...(((((((((......)))))))))...(((((((.........((....))..((....))))))))).)))... ( -39.70)
>DroAna_CAF1 2740 91 + 1
GGACAGCUCAUUUGCAGCCCAUCGAAGAAC------UAA---CGG---CGGCAAGCAAGACUCCAACUGCCGCACGUGCAACGACUUCAAGUCGUGGUCCAAA
((((.((......))...............------..(---(((---(((((..............)))))).)))...(((((.....))))).))))... ( -26.84)
>consensus
GGAGUCCCCAUUCGCAGCGAACCGCAAGGCCGGUGCCAG___CGGCGCCGGCAAACAGGACUCGAACUGCCGCACCUGCAACGAUUUCAAGUCGUGGUCCAAG
.((((((......((........))...(((((((((......))))))))).....)))))).....(((((....)).(((((.....))))))))..... (-25.45 = -26.67 +   1.21)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:49:25 2006