Locus 785

Sequence ID X_DroMel_CAF1
Location 2,183,375 – 2,183,488
Length 113
Max. P 0.927435
window1274

overview

Window 4

Location 2,183,375 – 2,183,488
Length 113
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 76.36
Mean single sequence MFE -41.08
Consensus MFE -23.10
Energy contribution -24.53
Covariance contribution 1.44
Combinations/Pair 1.31
Mean z-score -2.07
Structure conservation index 0.56
SVM decision value 1.18
SVM RNA-class probability 0.927435
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 2183375 113 + 22224390
--GCUUCCUGACUCCUCGCAGGAUCGUCGACUAUUGUCGUCGUCUGCUGAGCACGGACCUGGUCACGGCCCUUCGUCCGUUCUACCAGGCCAUUCGGAC-----GGAUGGCCUGGCUCAC
--((.(((((........))))).((.((((....)))).))...))(((((((((((..(((....)))....)))))).....((((((((((....-----))))))))))))))). ( -51.00)
>DroSec_CAF1 55047 113 + 1
--GCUUCCUGACUCCUCGCAGGAUCGUCGACUAUUGUCGUCGUCUGCUGAGCACGGACUUGGUCACGGCCCUUCGUCCGUUCUACCAGGCCAUUCGAAC-----GGAUGGCCUGACUCAC
--((.(((((........))))).((.((((....)))).))...))((((.((((((..(((....)))....)))))).....((((((((((....-----)))))))))).)))). ( -46.60)
>DroSim_CAF1 55354 113 + 1
--GCUUCCUCACUCCUCGCAGGAUCGUCGACUAUUGUCGUCGUCUGCUGAGCACGGACCUGGUCACGGCCCUUCGUCCGUUCUACCAGGCCAUUCGAAC-----GGAUGGCCAGACUCAC
--...............(((((..((.((((....)))).)))))))(((((((((((..(((....)))....)))))).......((((((((....-----)))))))).).)))). ( -43.00)
>DroEre_CAF1 59112 113 + 1
--GCUUCCUGGCUCCUCGCAGGAUUGUCGACUAUUGUCGUCGUCUGCUGAGCACGGACUUGGUCACCGCACUCCGUCCGUUCUACCAGGCCAUUCAGAC-----GGAUAGCCUCGCUCAC
--(((....))).....(((((...(.((((....)))).).)))))(((((((((((..(((......)))..))))))......((((.((((....-----)))).)))).))))). ( -38.80)
>DroWil_CAF1 61382 108 + 1
AUGCAAGGAGGC-UCUCGCUGGA--------UAAUGAG-GCGAUCUUUGAGCAGCGACCUAAACGCAGCUCUUCAGCCCUUCUAUGCGGCUGUGCACCCAAAAUAUAUGGGCAAA--CAU
.(((((((((((-(((((((...--------......)-)))).....)))).(((.......)))..)))))((((((......).)))))))))((((.......))))....--... ( -32.20)
>DroYak_CAF1 59244 113 + 1
--GCUUCCUGGCUCCUCGCCGGAUUGUCGACUAUUGUCGUCGUCUGCUGAGUACGGAUUUGGUCACCGCACUCCGUCCGUUCUACCAGGCCAUUCAGAC-----GGACAGCCUCGCUCAC
--(((..(((((.....)))))...(.((((....)))).)(((((((((((((((((..(((......)))..))))))...........)))))).)-----)))))))......... ( -34.90)
>consensus
__GCUUCCUGACUCCUCGCAGGAUCGUCGACUAUUGUCGUCGUCUGCUGAGCACGGACCUGGUCACGGCCCUUCGUCCGUUCUACCAGGCCAUUCAGAC_____GGAUGGCCUGACUCAC
..............(((((((...((.((((....)))).)).)))).))).((((((..((........))..)))))).......((((((((.........))))))))........ (-23.10 = -24.53 +   1.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:46 2006