Locus 7844

Sequence ID X_DroMel_CAF1
Location 19,548,133 – 19,548,243
Length 110
Max. P 0.613274
window12860

overview

Window 0

Location 19,548,133 – 19,548,243
Length 110
Sequences 3
Columns 110
Reading direction forward
Mean pairwise identity 93.94
Mean single sequence MFE -24.03
Consensus MFE -21.59
Energy contribution -21.70
Covariance contribution 0.11
Combinations/Pair 1.03
Mean z-score -1.80
Structure conservation index 0.90
SVM decision value 0.16
SVM RNA-class probability 0.613274
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 19548133 110 + 22224390
CAGGCGGGUAUAAUGUCGCGACUUGCAGAUACCCGUUACUCGUUAGUUAAUUUUUCUCUCUUUUAAAGAAAAGAGCGACAUCUGCUGGUAAAUUUCAUUACAUAUCUAAA
.....((((((((((.....(((.((((((...((.....))............((.(((((((....))))))).)).)))))).)))......)))))..)))))... ( -22.70)
>DroSec_CAF1 11748 110 + 1
CAGACAGGUAUAUUGUAGCGACUUGCAGAUACCCGUUACUCGUUAGUAAAUUCUUCUCUCUUUUAACAAAAAGAGCGACAUCUGCUGGUAAAUUUCAUUACAUAUCUAAA
.....((((((..((.....(((.((((((.....(((((....))))).....((.(((((((....))))))).)).)))))).)))......))....))))))... ( -22.70)
>DroSim_CAF1 12682 110 + 1
CAGACAGGUAUAUUGUAGCGACUAGCAGAUACCCGUUACUCGUUAGUAAAUUCUUCUCUCUUUUUAAAAAAAGAGCGACAUCUGCUGGUAAAUUUCAUUACAUAUCUAAA
.....((((((..((.....((((((((((.....(((((....))))).....((.(((((((....))))))).)).))))))))))......))....))))))... ( -26.70)
>consensus
CAGACAGGUAUAUUGUAGCGACUUGCAGAUACCCGUUACUCGUUAGUAAAUUCUUCUCUCUUUUAAAAAAAAGAGCGACAUCUGCUGGUAAAUUUCAUUACAUAUCUAAA
.....((((((..((.....(((.((((((.....(((((....))))).....((.(((((((....))))))).)).)))))).)))......))....))))))... (-21.59 = -21.70 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:48:48 2006