| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 2,182,203 – 2,182,299 |
| Length | 96 |
| Max. P | 0.922178 |
| Location | 2,182,203 – 2,182,299 |
|---|---|
| Length | 96 |
| Sequences | 4 |
| Columns | 103 |
| Reading direction | forward |
| Mean pairwise identity | 83.78 |
| Mean single sequence MFE | -24.42 |
| Consensus MFE | -16.79 |
| Energy contribution | -16.98 |
| Covariance contribution | 0.19 |
| Combinations/Pair | 1.25 |
| Mean z-score | -2.31 |
| Structure conservation index | 0.69 |
| SVM decision value | 1.15 |
| SVM RNA-class probability | 0.922178 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2182203 96 + 22224390 --AUAUGUUUGAAAUAAUAAUUUUCAGUACUCAUCGCCACUCUGGGGUUAAAUAGUGGCGUG--UGUGAAAAGGC--AAA-GGCAACGGCAAACAGAAACAAA --...((((((.........((((((.(((....(((((((.(........).))))))).)--))))))))...--...-(....)..))))))........ ( -23.00) >DroSec_CAF1 53900 93 + 1 --AUAUGUCUUAAAUAAUAUUUUUCAGCACUCAUCGCCACUCUGGGGUUA-AUAGUGGCGUG--UGUUGAAAA----AAA-GGCAAAGGCAAACAGAAACCAA --...((((((........(((((((((((....(((((((.(.......-).))))))).)--)))))))))----)..-....))))))............ ( -27.34) >DroSim_CAF1 54212 94 + 1 --GUAUGUUUUAAAUAAUAAUUUUCAGCACUCAUCGCCAUUCUGGGGUUA-AUAGUGGCGUG--UGUUGAAAA----AAAGGGCAAAGGCAAACAGAAACCAA --((.((((((.........((((((((((....(((((((.(.......-).))))))).)--)))))))))----........)))))).))......... ( -23.53) >DroYak_CAF1 58123 101 + 1 AUGCAUGUUUUAAAUAAUCAUUUUUAGCACUCAGCGCCACUCUGGGGUUA-ACAGUGGCGUGGCUGUGGAAAAGCAAAAA-GCCAAAGGCGAAAAGAAACUGA ...((.(((((.......((((.(((((.(((((.......)))))))))-).))))((.(((((.((......))...)-))))...)).....))))))). ( -23.80) >consensus __AUAUGUUUUAAAUAAUAAUUUUCAGCACUCAUCGCCACUCUGGGGUUA_AUAGUGGCGUG__UGUGGAAAA____AAA_GGCAAAGGCAAACAGAAACCAA .....((((((.........(((((((((..((.(((((((............)))))))))..)))))))))............))))))............ (-16.79 = -16.98 + 0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:43 2006