Locus 7823

Sequence ID X_DroMel_CAF1
Location 19,484,245 – 19,484,365
Length 120
Max. P 0.839395
window12833

overview

Window 3

Location 19,484,245 – 19,484,365
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 95.17
Mean single sequence MFE -48.04
Consensus MFE -43.50
Energy contribution -44.10
Covariance contribution 0.60
Combinations/Pair 1.05
Mean z-score -1.34
Structure conservation index 0.91
SVM decision value 0.74
SVM RNA-class probability 0.839395
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 19484245 120 + 22224390
ACUUGCAGCAACUUCUUAAGGAAGUUGAGGUGCUGCUCGACGGCCAGUGUGGAACUUGUGUCGGCCGGUAUCUGACUGGCCUGGUAGAUGUAGCGCAGCGGCUCCUCGUUGAACAGCUGA
.....((((((((((.....))))))((((.((((((((.((((((((.....)).)).)))(((((((.....)))))))...........))).)))))).))))........)))). ( -47.60)
>DroSec_CAF1 6230 120 + 1
ACUUGCAGCAACUUUUUGAGGAAGUUGUGAUGCUGCUCGACGGCCAGCGUGGAACUUGGGUCGGCCGGUAUCUGACUGGCCUGGUAGAUGUAGCGCAGCGGCUCCUCGUUGAACAGCUGG
.....((((...((..((((((.(((((..((((((((.((((((...(.....)...))))(((((((.....)))))))..)).)).))))))..)))))))))))..))...)))). ( -48.40)
>DroSim_CAF1 7180 120 + 1
ACUUGCAGCAACUUUUUGAGGAAGUUGUGGUGCUGCUCGACGGCCAGCGUGGAACUUGGGUCGGCCGGUAUCUGACUGGCCUGGUAGAUGUAGCGCAGCGGCUCCUCGUUGAACAGCUGG
.....((((...((..((((((.(((((.(((((((((.((((((...(.....)...))))(((((((.....)))))))..)).)).))))))).)))))))))))..))...)))). ( -51.30)
>DroEre_CAF1 5911 120 + 1
ACCUGCAGCAGCUUCUUGAGGAAGUUGUGGUGCUGCUCGACGGUCAGCGUGGAACUUGUGUCGGCCGGUAUCUGACUGGCCUGGUAGAUGUAUCGCAGCGGCUCCUCGUUGAACAGCUGA
....((.((((((((.....)))))))).))((((.(((((((((.((((((.((.(.(..((((((((.....))))))).)..).).)).)))).)))))....)))))).))))... ( -46.20)
>DroYak_CAF1 5466 120 + 1
ACCUGCAGCAGCUUCUUGAGGAAAUUGUGGUGCUGCUCGACGGCCAGCGUGGAACUUGUGUCGGCCGGUAUCUGACUGGCCUGGUAGAUGUAGCGCAGCGGCUCCUCGUUGAACAGCUGG
........(((((((.((((((..((((.(((((((((....(((((((..(...)..))).(((((((.....))))))))))).)).))))))).)))).))))))..))..))))). ( -46.70)
>consensus
ACUUGCAGCAACUUCUUGAGGAAGUUGUGGUGCUGCUCGACGGCCAGCGUGGAACUUGUGUCGGCCGGUAUCUGACUGGCCUGGUAGAUGUAGCGCAGCGGCUCCUCGUUGAACAGCUGG
.....((((...(((.((((((.(((((.(((((((((.((((((((........))).)))(((((((.....)))))))..)).)).))))))).)))))))))))..)))..)))). (-43.50 = -44.10 +   0.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:48:23 2006