Locus 7820

Sequence ID X_DroMel_CAF1
Location 19,483,254 – 19,483,373
Length 119
Max. P 0.911949
window12827

overview

Window 7

Location 19,483,254 – 19,483,373
Length 119
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 92.13
Mean single sequence MFE -47.90
Consensus MFE -39.76
Energy contribution -39.96
Covariance contribution 0.20
Combinations/Pair 1.06
Mean z-score -1.72
Structure conservation index 0.83
SVM decision value 1.08
SVM RNA-class probability 0.911949
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 19483254 119 + 22224390
ACGGCACAGCUGAUGCUUACCGGGCUC-CUUGAGCAACAGCUCCACGUGGCCGUUGAUCUGCUCGAAAACGGGAAGCAGCAGCAGCGGAUACUUGUGGGCCAGCUUCACCAGCAGCGAGG
..(((..(((((.((((((..((....-)))))))).)))))(((((.(.((((((..((((((........).)))))...))))))...).)))))))).(((.(....).))).... ( -44.80)
>DroSec_CAF1 5238 120 + 1
ACGGCACAGCUGAUGCUGACCGGGCUCCCUUGAGCAAAAGCUCCACGUGGCCGUUGAUCUGCUCGAAAACGGGCAGCAGUAGCAGCGGGUACUUGUGGGCCAGCUUCACCAGCAGCGAGG
.((((...)))).(((((.(.((((((....))))..((((((((((((.((((((.((((((((....))))))).)....)))))).)))..))))...)))))..)).))))))... ( -47.40)
>DroSim_CAF1 5301 119 + 1
ACGGCACAGCUGAUGCUGACCGGGCUC-CUUGAGCAAAAGCUCCACGUGGCCGUUGAUCUGCUCGAAAACGGGCAGCAGUAGCAGCGGGUACUUGUGGGCCAGCUUCACCANNNNNNNNN
.(((..((((....)))).)))(((((-...((((....))))((.(((.((((((.((((((((....))))))).)....)))))).))).)).)))))................... ( -45.10)
>DroEre_CAF1 4920 119 + 1
ACGGCACAGCUGAUGCUGACCAGGCUC-CUUGAGCAAGAGCUCUACGUGCCCGUUGAUCUGCUCGAAAACGGGCAGCAGCAGCAGCGGGUACUUGUGAGCCAGCUUCACCAGCAGCGAGG
...((.((((....))))....(((((-...((((....))))...((((((((((.((((((((....))))))).)....))))))))))....))))).(((.....))).)).... ( -51.10)
>DroYak_CAF1 4475 119 + 1
ACGGCACAGCUGAUGCUGACCGGGCUC-CUUGAGCAAGAGCUCCACGUGCCCGUUGAUCUGCUCGAAAACGGGCAGCAGCAACAGCGGGUACUUGUGAGCCAACUUCACCAGCAGCGAGG
.(((..((((....)))).)))(((((-...((((....))))((.((((((((((.((((((((....))))))).)....)))))))))).)).)))))..((((.(.....).)))) ( -51.10)
>consensus
ACGGCACAGCUGAUGCUGACCGGGCUC_CUUGAGCAAAAGCUCCACGUGGCCGUUGAUCUGCUCGAAAACGGGCAGCAGCAGCAGCGGGUACUUGUGGGCCAGCUUCACCAGCAGCGAGG
.(((..((((....)))).)))(((((....((((....))))((.(((.((((((.((((((((....))))))).)....)))))).))).)).)))))................... (-39.76 = -39.96 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:48:18 2006