Locus 782

Sequence ID X_DroMel_CAF1
Location 2,176,657 – 2,176,758
Length 101
Max. P 0.902056
window1270

overview

Window 0

Location 2,176,657 – 2,176,758
Length 101
Sequences 4
Columns 108
Reading direction forward
Mean pairwise identity 86.50
Mean single sequence MFE -30.45
Consensus MFE -20.86
Energy contribution -20.68
Covariance contribution -0.19
Combinations/Pair 1.30
Mean z-score -2.55
Structure conservation index 0.69
SVM decision value 1.02
SVM RNA-class probability 0.902056
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 2176657 101 + 22224390
UUCUGAGCGCCAGCAUUGUGUUUCGAA----AAAUCCCUAGGGAUUUUUCGAAACACCCUUGAACAUUUGCCAUGCAAAACA---GUGCGCUUUCAUAGAAUCGUGUC
(((((((((((..((..((((((((((----((((((....))))))))))))))))...))....(((((...)))))...---).))))))....))))....... ( -36.80)
>DroSec_CAF1 48515 98 + 1
UUCUGGGCGUCAGCAUUGUGUUUUGA------AGUCCCUAGGGGUUUUU-GAAACACCCUUCAACAUUUGCCAUGCAAAACA---GCGCGCUUUCACAGAAUCGUGUC
((((((((((..((...((((((..(------((.(((...))).))).-.)))))).........(((((...)))))...---)))))))....)))))....... ( -26.80)
>DroSim_CAF1 46188 98 + 1
UUCUGGGCGUCAGCAUUGUGUUUCGA------AAUCCCUAGGGGUUUUU-GAAACACCCUUCAACAUUUGCCAUGCAAAACA---GCGCGCUUUCACAGAAUCGUGUC
((((((((((..((...(((((((((------((.(((...))).))))-))))))).........(((((...)))))...---)))))))....)))))....... ( -29.40)
>DroEre_CAF1 49752 107 + 1
UUCUCGGCGCCAGCAUUGUGUUUCGAAACACGAAUCCCUAGGGGUUUUC-GAAACACCCUUGAAUAUUUGCCAUGCAAAACAGUGACUCGCUUUCAUGGAAUCCUGUU
.....((((....((..(((((((((.....((((((....))))))))-)))))))...))......))))......(((((.((.((.(......))).))))))) ( -28.80)
>consensus
UUCUGGGCGCCAGCAUUGUGUUUCGA______AAUCCCUAGGGGUUUUU_GAAACACCCUUCAACAUUUGCCAUGCAAAACA___GCGCGCUUUCACAGAAUCGUGUC
((((((((((..((...(((((((.......((((((....))))))...))))))).........(((((...)))))......)))))))....)))))....... (-20.86 = -20.68 +  -0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:42 2006