Locus 781

Sequence ID X_DroMel_CAF1
Location 2,174,870 – 2,174,984
Length 114
Max. P 0.718286
window1269

overview

Window 9

Location 2,174,870 – 2,174,984
Length 114
Sequences 5
Columns 114
Reading direction reverse
Mean pairwise identity 96.84
Mean single sequence MFE -31.17
Consensus MFE -26.59
Energy contribution -26.51
Covariance contribution -0.08
Combinations/Pair 1.10
Mean z-score -1.52
Structure conservation index 0.85
SVM decision value 0.39
SVM RNA-class probability 0.718286
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 2174870 114 - 22224390
AGUGUAGUAGAGUGUAGAAGCACGGCGCGUAAUGGUAGAGAAAAGCCCCGUAAACGAUUUUGCGGGCUGCUGCAUUAAAAUCCAUCAACGAAACGACAAUGGGCGUAUUGAACA
.((.((((...((((....)))).((((.(((((.(((.....(((((.(((((....)))))))))).))))))))....((((...((...))...)))))))))))).)). ( -28.50)
>DroSec_CAF1 46871 114 - 1
AGUGUAGCAGAGUGUAGAAGCACGGGGCGUAAUGGUAGAGAAAAGCCCCGUAAACGAUUUUGCGGGAUGCUGCAUUAAAAUCCAUCAACGAAACGACAAUGGGCGUAUUGAACA
(((((((((...(((((((..(((((((................)))))))......)))))))...)))))))))............(((.(((........))).))).... ( -32.19)
>DroSim_CAF1 44563 114 - 1
AGUGUAGCAGAGUGUAGAAGCACGGGGCGUAAUGGUAGAGAAAAGCCCCGUAAACGAUUUUGCGGGCUGCUGCAUUAAAAUCCAUCAACGAAACGACAAUGGGCGUAUUGAACA
((((((((((..(((((((..(((((((................)))))))......)))))))..))))))))))............(((.(((........))).))).... ( -36.59)
>DroEre_CAF1 47979 114 - 1
AGUGUAGCAGAGUGUAGAAGUACGCGGCGUAAUGGUAGAGAAAAGCACCGUAAACGAUUUUGCGGGCUGUUGCAUUAAAAUCCAUCAACGAAACGACAAUGGGCGUAUUGAACA
((((((((((..(((((((.((((..((................))..)))).....)))))))..))))))))))............(((.(((........))).))).... ( -27.59)
>DroYak_CAF1 49864 114 - 1
AGUGUGGCAGAGUGUAGAAGUACGGCGCGUAAUGGUAGAGAAAAGCCCCGUAAACGAUUUUGCGGGCUGCUGCAUUAAAAUCCAUCAACGAAACGACAAUGGGCGUAUUGAACA
((((..((((..(((((((.(((((.((................)).))))).....)))))))..))))..))))............(((.(((........))).))).... ( -30.99)
>consensus
AGUGUAGCAGAGUGUAGAAGCACGGGGCGUAAUGGUAGAGAAAAGCCCCGUAAACGAUUUUGCGGGCUGCUGCAUUAAAAUCCAUCAACGAAACGACAAUGGGCGUAUUGAACA
((((((((((..(((((((..((((.((................)).))))......)))))))..))))))))))............(((.(((........))).))).... (-26.59 = -26.51 +  -0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:41 2006