Locus 7782

Sequence ID X_DroMel_CAF1
Location 19,364,750 – 19,364,870
Length 120
Max. P 0.703306
window12770

overview

Window 0

Location 19,364,750 – 19,364,870
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 91.04
Mean single sequence MFE -24.10
Consensus MFE -23.31
Energy contribution -22.87
Covariance contribution -0.44
Combinations/Pair 1.07
Mean z-score -1.42
Structure conservation index 0.97
SVM decision value 0.36
SVM RNA-class probability 0.703306
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 19364750 120 - 22224390
ACCAAAAAAAAAAUAGAAAACAUCAGUAAUGUUAAUUAUAUUUAUCGUAUAUUUAUUGUUAACAACUCGUUGGACAGCGACUCAUUCAAGUCGAAUCCGAAUCCGAGAUGUACAAACUUC
...................(((((.....(((((((.(((..(((...)))..))).)))))))..((((((((...(((((......)))))..)))))...))))))))......... ( -23.20)
>DroSec_CAF1 7636 117 - 1
AUGG---AAAACAUGGAAAACAAGAGCAAUGUUAAUUAUAUUUAUAGUAUAUUUAUUGUUAACAACUCGUUGGACAGCGACUCAGGCAAGUCGAAUCCGAAUCCGAGAUGUGCGAACUUC
(((.---....)))...........(((.(((((((.(((..(((...)))..))).))))))).(((((((((...(((((......)))))..)))))...))))...)))....... ( -24.40)
>DroSim_CAF1 7523 117 - 1
AUGG---AAAACAUGGAAAACAAGAGUAAUGUUAAUUAUAUUUAUAGUAUAUUUAUUGUUAACAACUCGUUGGACAGCGACUCAGGCAAGUCGAAUCCGAAUCCGAGAUGUGCGAACUUC
....---...(((((((......((((..(((((((.(((..(((...)))..))).))))))))))).(((((...(((((......)))))..))))).)))...))))......... ( -24.70)
>consensus
AUGG___AAAACAUGGAAAACAAGAGUAAUGUUAAUUAUAUUUAUAGUAUAUUUAUUGUUAACAACUCGUUGGACAGCGACUCAGGCAAGUCGAAUCCGAAUCCGAGAUGUGCGAACUUC
.........................(((.(((((((.(((..(((...)))..))).))))))).(((((((((...(((((......)))))..)))))...))))...)))....... (-23.31 = -22.87 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:47:26 2006