Locus 7771

Sequence ID X_DroMel_CAF1
Location 19,334,915 – 19,335,032
Length 117
Max. P 0.726942
window12753

overview

Window 3

Location 19,334,915 – 19,335,032
Length 117
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 86.64
Mean single sequence MFE -38.10
Consensus MFE -28.92
Energy contribution -28.18
Covariance contribution -0.75
Combinations/Pair 1.15
Mean z-score -1.72
Structure conservation index 0.76
SVM decision value 0.41
SVM RNA-class probability 0.726942
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 19334915 117 + 22224390
ACUCAAUGC-GGCUGAGUCAGAGGCAGAGGCUAGAUAUCGAGUGGCAA-CAGUGUUUGUUUCUUUUCGCCAGUGAGGUGGAAAGUUUUGCA-UUUGCCGCUUGGCAGACCCAAUUUAGCA
.(((..(((-..(((...)))..))))))(((((((...(((((((((-..((((......(((((((((.....)))))))))....)))-))))))))))((.....)).))))))). ( -41.40)
>DroSec_CAF1 8320 115 + 1
ACUCAAUGC-GACUGAGUCAGCGGCAGGGGCUAGAAAUCGAGUGGCAA-CAGUG---GUUUCUUUUCGCCGGUGAGGUGGAAAGUUUUGCAGUUUGCCGCUUGGCAGACCCAAUUUAGCA
(((((....-...)))))..((.....(((((.(...(((((((((((-(.(..---(...(((((((((.....)))))))))..)..).).)))))))))))))).)))......)). ( -40.30)
>DroEre_CAF1 8030 109 + 1
ACUCAAUGC-GGCUGAGUCAG------AGCCUAGAAAUCGAGUGGCAAAGAGUG---CUUUCUUUUCGCCAGUGAGGUGGAAAGUUUUGCA-UUUGCCGUUUGGCGGAAUCAAUUUAGCA
......(((-((((.......------))))......(((((((((((...(((---(...(((((((((.....)))))))))....)))-)))))))))))).............))) ( -33.80)
>DroYak_CAF1 8003 109 + 1
GCUCAAUGCUGGCUGAGUCAG------AGGCUAGAAAUCGAGUGGCAA-CAGUG---GUUUCUUUUCGUCAGUGAGGUGGAAAGUUUUGCA-GUUGCCGUUCGACGGACCCAAUUUAGCA
(((.(((.((((((.......------.))))))...(((((((((((-(.(..---(...((((((..(.....)..))))))..)..).-))))))))))))........))).))). ( -36.90)
>consensus
ACUCAAUGC_GGCUGAGUCAG______AGGCUAGAAAUCGAGUGGCAA_CAGUG___GUUUCUUUUCGCCAGUGAGGUGGAAAGUUUUGCA_UUUGCCGCUUGGCAGACCCAAUUUAGCA
(((((........)))))...........((((((..(((((((((((...(((.......(((((((((.....)))))))))...)))...))))))))))).........)))))). (-28.92 = -28.18 +  -0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:47:11 2006