Locus 7751

Sequence ID X_DroMel_CAF1
Location 19,285,133 – 19,285,248
Length 115
Max. P 0.937304
window12725

overview

Window 5

Location 19,285,133 – 19,285,248
Length 115
Sequences 5
Columns 115
Reading direction reverse
Mean pairwise identity 89.52
Mean single sequence MFE -29.27
Consensus MFE -24.87
Energy contribution -25.10
Covariance contribution 0.23
Combinations/Pair 1.06
Mean z-score -1.78
Structure conservation index 0.85
SVM decision value 1.26
SVM RNA-class probability 0.937304
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 19285133 115 - 22224390
AAACAAAGUUUGAUUGUAUCAGGUGCUUUUGCCCCACUGGCGUAGCUCGCUCAUUGUUCACAGCUCCUGUGUAUAAUUAUAGCCUUGCAAGAAAAGGGGGUGUCACAAUUUGUUU
(((((((...((((.((((...))))....(((((.((.(((..(((.....(((((.(((((...))))).)))))...)))..)))......)))))))))))...))))))) ( -28.20)
>DroSec_CAF1 64071 111 - 1
AAACAAAGUUUGAUUGUAUCAGGUGCUUUUGCCCCACUGGCGUAGCUCGCUCAUUGUUCUCCGCUCCUGUGUAUAAUUAUACCCUUGCA----AAGAGGGUGUCACAAUUUGUUU
(((((((...(((((((((((((.((....(((.....)))(.((....)))..........)).)))).)))))))))(((((((...----..)))))))......))))))) ( -30.80)
>DroSim_CAF1 68408 111 - 1
AAACAAAGUUUGAUUGUAUCAGGUGCUUUUGCCCCACUGGCGUAGCUCGCUCAUUGUUCUCAGCUCCUGUGUAUAAUUAUACCCUUGCA----AAGAGGGUGUCACAAUUUGUUU
(((((((...(((((((((((((.(((.......((.(((((.....))).)).)).....))).)))).)))))))))(((((((...----..)))))))......))))))) ( -32.20)
>DroEre_CAF1 60705 111 - 1
AAACAAAGUUUGAUUGUAUCAGGUGCUUUUGCCCCACUGGCGUAGCUCGCUCAUUGUUCUCUGCUCCUGUGUAUAAUUAUACCCUUGCA----AAGAGGGUGUCACAAUUUGUUC
.((((((...(((((((((((((.((........((.(((((.....))).)).))......)).)))).)))))))))(((((((...----..)))))))......)))))). ( -30.84)
>DroYak_CAF1 65094 94 - 1
AAACAAAGUUUGAUUGUAUCAGGUGCU-----------------GCUCGCUCAUUGUUCUCUGCUCCAGUGUAUAAUUAUACCCUCGCA----AAGAGGGUGUCACAAUUUGUUC
.((((((...(((((((((..((.((.-----------------....((.....)).....)).))...)))))))))(((((((...----..)))))))......)))))). ( -24.30)
>consensus
AAACAAAGUUUGAUUGUAUCAGGUGCUUUUGCCCCACUGGCGUAGCUCGCUCAUUGUUCUCAGCUCCUGUGUAUAAUUAUACCCUUGCA____AAGAGGGUGUCACAAUUUGUUU
.((((((...(((((((((((((.((....(((.....))).......((.....)).....)).)))).)))))))))(((((((.........)))))))......)))))). (-24.87 = -25.10 +   0.23)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:46:46 2006