| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 19,259,759 – 19,259,863 |
| Length | 104 |
| Max. P | 0.756078 |
| Location | 19,259,759 – 19,259,863 |
|---|---|
| Length | 104 |
| Sequences | 4 |
| Columns | 104 |
| Reading direction | forward |
| Mean pairwise identity | 88.13 |
| Mean single sequence MFE | -27.55 |
| Consensus MFE | -20.12 |
| Energy contribution | -20.62 |
| Covariance contribution | 0.50 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.90 |
| Structure conservation index | 0.73 |
| SVM decision value | 0.49 |
| SVM RNA-class probability | 0.756078 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 19259759 104 + 22224390 AUAAGUCACAAAAAAAAAGUGCCCAACGAGACGAACAUUUCGAGUGCUCACAAUGGGAUACUCCUUUUACUUUGCAACGAAGGAUGGCGAAAGUCAACUCCGAU ....((..((((((((.((((((((.(((((......))))).((....))..)))).))))..))))..))))..))...(((((((....))))..)))... ( -23.20) >DroSim_CAF1 48014 101 + 1 AUAAGUCACAAA---AAAGUGCCCAACGAGACGAACUUUUCGAGUGCUCACAAUGGGGUACUCCUUUUACUUUGGAACGGAGGACGGCGAAAGUCAACUCCGAU ....(.(((...---...))))((((.((((......))))((((((((......))))))))........))))..(((((...(((....)))..))))).. ( -30.50) >DroEre_CAF1 43632 100 + 1 AUAAGUCAGAA----AAAGUGCCCGAAGAGGCGAACUUUUUGAGUGCUCACAAUGGGGUACUCCUUUUACUUUGGAACGGAGUACGCCGCAAGUCAAUUCCGAU ....(((.(((----..((..(.(((((((.....))))))).)..))......((.(((((((.(((......))).))))))).)).........))).))) ( -30.00) >DroYak_CAF1 46458 101 + 1 AUAAGUCACAAA---AAAGUGCCCAACGAGACGAACUUUUUGAGUGCUCACAAUGGGGCACUCCUUUUACUUAGCCACGGAGUACGCCGAAAGUUAACUCCAAU .(((((...(((---..(((((((...(((....((((...)))).)))......)))))))..))).))))).....(((((....(....)...)))))... ( -26.50) >consensus AUAAGUCACAAA___AAAGUGCCCAACGAGACGAACUUUUCGAGUGCUCACAAUGGGGUACUCCUUUUACUUUGCAACGGAGGACGCCGAAAGUCAACUCCGAU ...............((((((......((((......))))((((((((......))))))))....))))))....(((((...(((....)))..))))).. (-20.12 = -20.62 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:46:33 2006