| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 19,252,704 – 19,252,819 |
| Length | 115 |
| Max. P | 0.951866 |
| Location | 19,252,704 – 19,252,819 |
|---|---|
| Length | 115 |
| Sequences | 3 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 81.45 |
| Mean single sequence MFE | -29.07 |
| Consensus MFE | -25.94 |
| Energy contribution | -25.83 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.77 |
| Structure conservation index | 0.89 |
| SVM decision value | 1.42 |
| SVM RNA-class probability | 0.951866 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 19252704 115 - 22224390 CGCCAUCCAAACUGCUCAUUAUCAGAAGUAAUUUAACUUUGGGGCCGCUCUUCGCUAAUGAAGGGUGGUACCUACCACCCAACGAUCCACCAAACC----GCCGCCCACUUGUGCGCUC (((((...................(((((......))))).((((.((..((((....))))(((((((....)))))))................----)).))))...)).)))... ( -30.00) >DroSec_CAF1 39423 107 - 1 -GCCAUCGAAGCUGCUCAUUAUCAGAAGUAAUUUAACUUUGGGACCGCUCUUCGCUAAUGAAGGGUGGUACCC--C---CA------CACCAAACCCCACCCCGCCCACUGGUGCGCUC -(((((((.....((.........(((((......)))))((((((((((((((....))))))))))).)))--.---..------................))....))))).)).. ( -29.60) >DroSim_CAF1 40869 100 - 1 -ACCAUCCUAGCUGCUCAUUAUCAGAAGUAAUUUAACUUUGGGACCGCUCUUCGCUAAUGAAGGGUGGUACCC--C----------------AUCCCCACCCCGCCCACUGGUGCGCUC -............((.(((((...(((((......)))))((((((((((((((....))))))))))).)))--.----------------.................))))).)).. ( -27.60) >consensus _GCCAUCCAAGCUGCUCAUUAUCAGAAGUAAUUUAACUUUGGGACCGCUCUUCGCUAAUGAAGGGUGGUACCC__C___CA______CACCAAACCCCACCCCGCCCACUGGUGCGCUC .............((.(((((...(((((......)))))((((((((((((((....))))))))))).)))....................................))))).)).. (-25.94 = -25.83 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:46:28 2006