| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 19,251,318 – 19,251,421 |
| Length | 103 |
| Max. P | 0.755787 |
| Location | 19,251,318 – 19,251,421 |
|---|---|
| Length | 103 |
| Sequences | 5 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 70.67 |
| Mean single sequence MFE | -30.98 |
| Consensus MFE | -15.91 |
| Energy contribution | -16.22 |
| Covariance contribution | 0.31 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.73 |
| Structure conservation index | 0.51 |
| SVM decision value | 0.49 |
| SVM RNA-class probability | 0.755787 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 19251318 103 - 22224390 --ACAUCACAGAGCCGAAUGGGUCAG---AAAAGCAGCUAAAUCAAUGGCCAGUGGCUAUUGUGUUUCAAGGAGCUGC------CUGGUGUCUGGUCUGGUCUUUCGGAUCCUC --........((.(((((.((..(((---(...((((((((((((((((((...)))))))).)))).....))))))------(..(...)..)))))..))))))).))... ( -34.40) >DroSec_CAF1 38049 92 - 1 --ACAUCACA---------------G---CAAAGCAGCUAAAUCAAUGGCCAGUGGCUAUUGUGUUUCAAGGAGCAGCUACCGACUGGUGG--UGUCUGGUCUUUGGGACCCUC --.......(---------------(---(......)))....((((((((...)))))))).((..((((((.(((.(((((.....)))--)).))).))))))..)).... ( -32.30) >DroSim_CAF1 39492 92 - 1 --ACAUCACA---------------G---CAAAGCAGCUAAAUCAAUGGCCAGUGGCUAUUGUGUUUCAAGGAGCAGCUACCGACUGGUGG--UGUCUGGUCUUUGGGACCCUC --.......(---------------(---(......)))....((((((((...)))))))).((..((((((.(((.(((((.....)))--)).))).))))))..)).... ( -32.30) >DroEre_CAF1 35551 78 - 1 --ACAUCGCAGAGCGGAAUGGAGCAG---GAAAGCAGCUAAAUCAAUGGCCAGUGGCUAUUGUGUUUCAAGGAGCUGC-------------------------------CCCUC --...((((...))))........((---(...((((((((((((((((((...)))))))).)))).....))))))-------------------------------.))). ( -22.00) >DroYak_CAF1 37450 105 - 1 AAACAUCACAGUGCGGAAUGGUGCAGAAGAAAAACAGCUAAAUCAAUGGCCAUUGGCUAUUGUGUUUCAAGGAGCUGU---CGACUGCUGG---GUCU---CUUCUGGACCCUC ...................(((.(((((((...((((((((((((((((((...)))))))).)))).....))))))---.((((....)---))))---)))))).)))... ( -33.90) >consensus __ACAUCACAG_GC_GAAUGG__CAG___AAAAGCAGCUAAAUCAAUGGCCAGUGGCUAUUGUGUUUCAAGGAGCUGC___CGACUGGUGG___GUCUGGUCUUUGGGACCCUC .................................((((((((((((((((((...)))))))).)))).....))))))................((((........)))).... (-15.91 = -16.22 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:46:27 2006