Locus 773

Sequence ID X_DroMel_CAF1
Location 2,148,273 – 2,148,383
Length 110
Max. P 0.564367
window1257

overview

Window 7

Location 2,148,273 – 2,148,383
Length 110
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 87.07
Mean single sequence MFE -28.82
Consensus MFE -21.61
Energy contribution -22.73
Covariance contribution 1.12
Combinations/Pair 1.10
Mean z-score -1.58
Structure conservation index 0.75
SVM decision value 0.06
SVM RNA-class probability 0.564367
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 2148273 110 + 22224390
UUGUAAGAGAUCACUGACGAUU-GCACUACUUAUGCAAGAGUUAGGCAACUGGAUCGUUGCAC---------UAAUCGCAGUAGAUUUUUAAUUAAGGUCACUGGCUCAUAGCCAUUAAA
.....(((((((((((.(((((-(((.......)))))...(((((((((......))))).)---------)))))))))).)))))))............((((.....))))..... ( -29.80)
>DroSec_CAF1 28471 110 + 1
UUGUAAGAGAUCACUGGCGAUU-GCACGACUUAUGCAAGAGUUAGGCAACUGGAUCGUUGCAC---------UAAUCGCAGUAGAUUUUUAAUUAAGGUCACUGGCUCAUAGCCAUUAAA
.....(((((((((((.(((((-(((.......)))))...(((((((((......))))).)---------)))))))))).)))))))............((((.....))))..... ( -29.80)
>DroSim_CAF1 25970 110 + 1
UUGUAAGAGAUCACUGGCGAUU-GCACUACUUAUGCAAGAGUUAGGCAACUGGAUCGUUGCAC---------AAAUCGCAGUAGAUUUUUAAUUAAGGUCACUGGCUCAUAGCCAUUAAA
..............((((..((-(((.......)))))((((((((((((......)))))..---------...........((((((.....)))))).)))))))...))))..... ( -28.50)
>DroEre_CAF1 29382 119 + 1
AUGUAAGAGAUCACUGGCGAUU-GCACUACUUAUGCAAGAGUUAAGCAACUAGAUCGUUGGACUAGAUCGUCUAAUAGCACUAGAUUUUUAAUUAAUGUCACUGGCUUAUACCCAAUAAA
..(((.(((.(((.(((((.((-((...((((......))))...))))((((...(((((((......)))))))....))))............))))).)))))).)))........ ( -25.20)
>DroYak_CAF1 31492 114 + 1
AUGUAAAAGAUCACUGGCGAUUGGCACUUCUUAUGCAAGAGCUAAGCAACUGGAUCGUUGCACU-----GACUAAUCGCCGUAGGUUUAUAAUUAAGGUCACUGGCUUGCAGCCAAUAU-
.......(((((((.(((((((((((.(((((....)))))....(((((......)))))..)-----).))))))))))).)))))..............((((.....))))....- ( -30.80)
>consensus
UUGUAAGAGAUCACUGGCGAUU_GCACUACUUAUGCAAGAGUUAGGCAACUGGAUCGUUGCAC_________UAAUCGCAGUAGAUUUUUAAUUAAGGUCACUGGCUCAUAGCCAUUAAA
.....(((((((((((.(((((...........(((((((.((((....)))).)).)))))...........))))))))).)))))))............((((.....))))..... (-21.61 = -22.73 +   1.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:31 2006