Locus 769

Sequence ID X_DroMel_CAF1
Location 2,119,096 – 2,119,188
Length 92
Max. P 0.536107
window1249

overview

Window 9

Location 2,119,096 – 2,119,188
Length 92
Sequences 6
Columns 94
Reading direction forward
Mean pairwise identity 71.00
Mean single sequence MFE -30.15
Consensus MFE -14.60
Energy contribution -15.13
Covariance contribution 0.53
Combinations/Pair 1.14
Mean z-score -1.56
Structure conservation index 0.48
SVM decision value 0.01
SVM RNA-class probability 0.536107
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 2119096 92 + 22224390
CGGGCCCAGGUGGAAACGCCGGAUACGGUGUACUGGGACCGACUGGCGGUGAGUU--GUAUAGGACUAGGCAGAGAGGCUCGGCAACCAAAUCA
(((((((.((((....)))).....((((.(....).)))).(((.(....((((--......)))).).))).).))))))............ ( -30.80)
>DroSec_CAF1 46 80 + 1
CGGUCCCAGGUGGAAACGCCGGAUACGGUAUACUGGGACCGACUGGCGGUGAGUU--GUAUAGGACUCGACA------------AACCAGAUCA
(((((((((..(....)((((....))))...))))))))).((((..(((((((--......))))).)).------------..)))).... ( -37.70)
>DroSim_CAF1 46 79 + 1
CGGUCCCAGGUGGAAACGCCGGAUACGGUGUACUGGGACCGACUGGCGGUGAGUU--GUA-AGGACUCGACA------------AACCAGAUCA
(((((((((......((((((....)))))).))))))))).((((..(((((((--...-..))))).)).------------..)))).... ( -37.60)
>DroEre_CAF1 46 92 + 1
CUGGCUCAGGUGGAAACGCCGGAUACGGUGUACUGGGACCGAUUGGCGGUGAGUA--GUAUGAGAUGCGGCACAGAAACUCGUCAACCAGCUCA
..((((..((((....))))((...((((.(....).)))).(((((((((.(((--........)))..))).......)))))))))))).. ( -26.81)
>DroYak_CAF1 46 92 + 1
CGGGCUCAGGUGGAAACGCCGGAUACGGUGUACUGGGACCGUCUGGCGGUGAGUU--GCAUGAGAUGCGGCAGAGAAACUCGGCAACCAUUUCA
..((((((...(....)((((((..((((.(....).))))))))))..))))))--...(((((((..((.(((...))).))...))))))) ( -32.20)
>DroMoj_CAF1 43 85 + 1
AAGGCGCAAGUGGUCACGCCCGAUACAAUUUACUGGGAUCGUUUAGCGGUAAGCUCAUUGUU---CUUAUUGUAGAUA-UAAUC---AAAGU--
..((((..........)))).(((...(((((((((((.((...(((.....)))...)).)---))))..)))))).-..)))---.....-- ( -15.80)
>consensus
CGGGCCCAGGUGGAAACGCCGGAUACGGUGUACUGGGACCGACUGGCGGUGAGUU__GUAUAGGACUCGGCA_AGA_A_UCG_CAACCAGAUCA
....(((((..(....)((((....))))...)))))((((.....))))............................................ (-14.60 = -15.13 +   0.53)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:24 2006