a score=0
s X_DroMel_CAF1 19142600 115 + 22224390 GAUCUUGAACUACUGCUACUACAUAUGUUUUCUAGCCUUGGUUUCGAAAAAAAAAAAAACAUUUAGCUCUAGGCCAAAUUAAUAAAA-AUUUCCUAAGCUCAUCCCACUCGUUACU
s DroSec_CAF1 13444 101 + 1 GAUCUUGAACUACUGCU-----AUAUGUUUUCUAGCCUUGGCUUCGAAU------AAAACGUUUAGCUCUAGGUCAAAUCAAUAAAAAAAAUCUUAACUUCAUCCCACUCGU----
s DroSim_CAF1 12250 103 + 1 GAUCUUGAACUACUGCU-----AUAUGUUUUCUAGCCUUGGCUUCGAAU------AAAACGUUUAGCUCUAGGCCAAAUCAAUAAAA-AAAUCUUAACUUCAUCCCACUCCC-ACU