Locus 7679

Sequence ID X_DroMel_CAF1
Location 19,142,283 – 19,142,403
Length 120
Max. P 0.974588
window12601

overview

Window 1

Location 19,142,283 – 19,142,403
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 96.81
Mean single sequence MFE -34.52
Consensus MFE -33.34
Energy contribution -33.77
Covariance contribution 0.44
Combinations/Pair 1.05
Mean z-score -2.51
Structure conservation index 0.97
SVM decision value 1.73
SVM RNA-class probability 0.974588
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 19142283 120 - 22224390
UCGAUGGCAAAAUCAAAUUCUAAUCGUCGACGCUAUCAUAAUGUAUUUAUGAGUUGUGUUAUUUGUUUUUGGUUUUCGCGUACCGUGCGUAUACGUAAUGCGCUCAGUACGGAGUUAUCU
..((((((.((((((((..(.(((....(((((..((((((.....))))))...)))))))).)..))))))))((.(((((.(.((((((.....)))))).).))))))))))))). ( -36.30)
>DroSec_CAF1 13225 120 - 1
UCGAUGGCAAAAUCAAAUUCUAAUCGUCGACGCUAUCAUAAUGUAUUUAUGAGUUGUGUUAUUCGUUUUUGGUUCUCGCGUACCGUGCGUAUACGUAAUGCGCUCAGUACGGAGUUAUCU
..((((((..(((((((..(.(((....(((((..((((((.....))))))...)))))))).)..))))))).((.(((((.(.((((((.....)))))).).))))))))))))). ( -35.30)
>DroSim_CAF1 11952 120 - 1
UCGAUGGCAAAAUCAAAUUCUAAUCGUCGACGCUAUCAUAAUGUAUUUAUGAGUUGUGUUAUUUGUUUUUGGUUUUCGCGUACCGUGCGUAUACGUAAUGCGCUCAGUGCGGAGUUAUCU
..((((((.((((((((..(.(((....(((((..((((((.....))))))...)))))))).)..))))))))((.(((((.(.((((((.....)))))).).))))))))))))). ( -36.30)
>DroYak_CAF1 6911 120 - 1
UCGAUGGCAAAAUCAAAUUCUAAUCGUCGUCGCUAUCAUAAUGUAUUUAUGAGUUGUGUUAUUUGUUUUUGGUUUUCGCGCACCGGGCGUAUACGUAAUGCGCUCAGUUUGGAGUUAUCU
..((((((.((((((((..(.(((......(((..((((((.....))))))...)))..))).)..))))))))((.((.((.((((((((.....)))))))).)).)))))))))). ( -30.20)
>consensus
UCGAUGGCAAAAUCAAAUUCUAAUCGUCGACGCUAUCAUAAUGUAUUUAUGAGUUGUGUUAUUUGUUUUUGGUUUUCGCGUACCGUGCGUAUACGUAAUGCGCUCAGUACGGAGUUAUCU
..((((((.((((((((..(.(((....(((((..((((((.....))))))...)))))))).)..))))))))((.(((((.(.((((((.....)))))).).))))))))))))). (-33.34 = -33.77 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:44:56 2006