| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 19,139,822 – 19,139,939 |
| Length | 117 |
| Max. P | 0.803991 |
| Location | 19,139,822 – 19,139,939 |
|---|---|
| Length | 117 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 82.13 |
| Mean single sequence MFE | -26.03 |
| Consensus MFE | -14.93 |
| Energy contribution | -15.93 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.81 |
| Structure conservation index | 0.57 |
| SVM decision value | 0.63 |
| SVM RNA-class probability | 0.803991 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 19139822 117 - 22224390 AUAACUCACACCACAAGAU--GGCAAUUAAAUAUGCAUCUUAAAGUGCGUUCUUUUCUCUGCGUACUUUUUCCUU-CUUAGGUGCAAAACCUUAUCACUUAUCACGUGUGUCUUGUCUUG .............((((((--((((........(((((((.(((((((((..........)))))))))......-...))))))).........(((.......)))))))..)))))) ( -25.10) >DroSec_CAF1 10915 107 - 1 A---AUCGCAACACAAGAA--GGCACUUAAAUAUGCAUCUUAAAGUCCGUUCUUUUCUCUGCGUUCUUUGCCUUU-CUUUGGUGCAGAACCUUA-------UCACGUGUGUCUUGUCUUG .---....(((.((((((.--.((((........(((....((((......))))....)))(((((.((((...-....)))).)))))....-------....)))).)))))).))) ( -25.40) >DroSim_CAF1 9576 110 - 1 A---AUCACACCACAAGAUACACCACUUAAAUAUGCAUCUUAAAGUCCGUUCUUUUCUCUGCGUUCUAAGCAUUUUUUUUGGUGCAGAACCUUA-------UCACGUGUGUCUUGUCUUG .---....((..(((((((((((...........(((....((((......))))....)))(((((..(((((......))))))))))....-------....)))))))))))..)) ( -27.60) >consensus A___AUCACACCACAAGAU__GGCACUUAAAUAUGCAUCUUAAAGUCCGUUCUUUUCUCUGCGUUCUUUGCCUUU_CUUUGGUGCAGAACCUUA_______UCACGUGUGUCUUGUCUUG ........((..(((((((...((((......(((((....((((......))))....)))))................(((.....)))..............)))))))))))..)) (-14.93 = -15.93 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:44:53 2006