Locus 7673

Sequence ID	X_DroMel_CAF1
Location	19,115,418 – 19,115,524
Length	106
Max. P	0.999579

overview

Window 3

Location	19,115,418 – 19,115,524
Length	106
Sequences	5
Columns	106
Reading direction	forward
Mean pairwise identity	91.31
Mean single sequence MFE	-27.36
Consensus MFE	-23.66
Energy contribution	-23.98
Covariance contribution	0.32
Combinations/Pair	1.13
Mean z-score	-1.51
Structure conservation index	0.86
SVM decision value	0.86
SVM RNA-class probability	0.868706
Prediction	RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 19115418 106 + 22224390
CUCAGUGUAGCAUUCCGCGCCGAGCCCAAAAGUUUGCUACAUUGAGUUAACUUGGUCUUUUUCCACGAUUUGUCGUGGAUUCGUUUGCAUUUAUUGCUUAUCGGUU
((((((((((((..(.((.....))......)..))))))))))))...............(((((((....))))))).(((...(((.....)))....))).. ( -31.70)
>DroSec_CAF1 4040 106 + 1
CUCAGUGUAGCAUUCCGCGCCGAGCCCAAAAGUUUGCUACAUUGAGUUCACUUGGUCUUUUUCCACGGCUUGUCGUGGAUUCGUUUGCAUUUAUUGCUUAUCGGUU
((((((((((((..(.((.....))......)..))))))))))))...............(((((((....))))))).(((...(((.....)))....))).. ( -31.70)
>DroSim_CAF1 2594 106 + 1
CUCAGUGUAGCAUUCCGCGCCGAGCCCAAAAGUUUGCUACAUUGAGUUCACUUGGUCUUUUUCCACGGCUUGUCGUGGAUUCGUUUGCAUUUAUUGCUUAUCGGUU
((((((((((((..(.((.....))......)..))))))))))))...............(((((((....))))))).(((...(((.....)))....))).. ( -31.70)
>DroEre_CAF1 3286 105 + 1
UUCAGUGUAGCAUUUUGCACCGAGCCCAAAAGUUUGCUACAUAGUGUGUACUUGGUCGUUUUCCACGAUUCGU-GUAGAUUAGUUUGCAUUUAUUGCUUAUCGGUU
.((.((((((....)))))).))(((...((((.(((....((((.(((((..((((((.....)))))).))-))).))))....)))......))))...))). ( -20.60)
>DroYak_CAF1 3918 105 + 1
UUCAGUGUAGCAUUUCGCACCGAGCCCAAAAGUUUGCUACAUAGAAUUUACUUGGUCGUUUUCCACAAUUCGU-GUGGAUUAGUUUGCAUUUAUUGCUUAUCGGUU
....(((........)))((((((.((((((((((........))))))..)))).)....((((((.....)-))))).......(((.....)))...))))). ( -21.10)
>consensus
CUCAGUGUAGCAUUCCGCGCCGAGCCCAAAAGUUUGCUACAUUGAGUUCACUUGGUCUUUUUCCACGAUUUGUCGUGGAUUCGUUUGCAUUUAUUGCUUAUCGGUU
((((((((((((..(.((.....))......)..)))))))))))).....(((((.....(((((((....))))))).......(((.....)))..))))).. (-23.66 = -23.98 +   0.32)

alignment

secondary structure

dotplot

Window 4

Location	19,115,418 – 19,115,524
Length	106
Sequences	5
Columns	106
Reading direction	reverse
Mean pairwise identity	91.31
Mean single sequence MFE	-26.18
Consensus MFE	-24.30
Energy contribution	-24.46
Covariance contribution	0.16
Combinations/Pair	1.19
Mean z-score	-2.30
Structure conservation index	0.93
SVM decision value	3.74
SVM RNA-class probability	0.999579
Prediction	RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 19115418 106 - 22224390
AACCGAUAAGCAAUAAAUGCAAACGAAUCCACGACAAAUCGUGGAAAAAGACCAAGUUAACUCAAUGUAGCAAACUUUUGGGCUCGGCGCGGAAUGCUACACUGAG
.........(((.....))).......(((((((....)))))))...............((((.(((((((...(((((.((...)).)))))))))))).)))) ( -29.90)
>DroSec_CAF1 4040 106 - 1
AACCGAUAAGCAAUAAAUGCAAACGAAUCCACGACAAGCCGUGGAAAAAGACCAAGUGAACUCAAUGUAGCAAACUUUUGGGCUCGGCGCGGAAUGCUACACUGAG
.........(((.....))).......((((((......))))))...............((((.(((((((...(((((.((...)).)))))))))))).)))) ( -29.10)
>DroSim_CAF1 2594 106 - 1
AACCGAUAAGCAAUAAAUGCAAACGAAUCCACGACAAGCCGUGGAAAAAGACCAAGUGAACUCAAUGUAGCAAACUUUUGGGCUCGGCGCGGAAUGCUACACUGAG
.........(((.....))).......((((((......))))))...............((((.(((((((...(((((.((...)).)))))))))))).)))) ( -29.10)
>DroEre_CAF1 3286 105 - 1
AACCGAUAAGCAAUAAAUGCAAACUAAUCUAC-ACGAAUCGUGGAAAACGACCAAGUACACACUAUGUAGCAAACUUUUGGGCUCGGUGCAAAAUGCUACACUGAA
...((....(((.....))).......(((((-.......)))))...))............(..(((((((...(((((.((...)).))))))))))))..).. ( -19.10)
>DroYak_CAF1 3918 105 - 1
AACCGAUAAGCAAUAAAUGCAAACUAAUCCAC-ACGAAUUGUGGAAAACGACCAAGUAAAUUCUAUGUAGCAAACUUUUGGGCUCGGUGCGAAAUGCUACACUGAA
...((....(((.....))).......(((((-(.....))))))...))..........(((..(((((((...(((((.((...)).))))))))))))..))) ( -23.70)
>consensus
AACCGAUAAGCAAUAAAUGCAAACGAAUCCACGACAAAUCGUGGAAAAAGACCAAGUAAACUCAAUGUAGCAAACUUUUGGGCUCGGCGCGGAAUGCUACACUGAG
.........(((.....))).......((((((......))))))...............((((.(((((((...(((((.((...)).)))))))))))).)))) (-24.30 = -24.46 +   0.16)

alignment

secondary structure

dotplot

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:44:50 2006