Locus 7661

Sequence ID X_DroMel_CAF1
Location 19,083,203 – 19,083,298
Length 95
Max. P 0.723394
window12576

overview

Window 6

Location 19,083,203 – 19,083,298
Length 95
Sequences 6
Columns 103
Reading direction reverse
Mean pairwise identity 78.40
Mean single sequence MFE -33.22
Consensus MFE -21.47
Energy contribution -21.38
Covariance contribution -0.08
Combinations/Pair 1.05
Mean z-score -1.49
Structure conservation index 0.65
SVM decision value 0.41
SVM RNA-class probability 0.723394
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 19083203 95 - 22224390
C----ACUUAGACAUUGUCCAG----UGAUUCGUGGACAUAUUCACCUGCUGCAGACUGCGACUGAUGCUGGCCAGGAGGCAGGCAUUGAAGCUGUAGGAGAA
.----.....((...((((((.----.......))))))...))..((.((((((.((.....(((((((.(((....))).))))))).)))))))).)).. ( -31.20)
>DroSec_CAF1 5731 94 - 1
-----GACUGGACAUUGUCCAG----CGAUUCGUGGUCAUAAUCACCUGCUGCAGGCUGCGACUGAUGCUGGCCAGGAGGCAGGCGUUGAAGCUGUAGGAGAA
-----(.((((((...))))))----).....(((((....)))))((.((((((.((.((((....(((.(((....))).))))))).)))))))).)).. ( -33.80)
>DroSim_CAF1 5698 94 - 1
-----GGCUGGACAAUGUCCAG----CGAUUCGUGGUCAUAUUCACCUGCUGCAGGCUGCGACUGAUGCUGGCCAGGAGGCAGGCGUUGAAGCUGUAGGAGAA
-----.(((((((...))))))----).....((((......))))((.((((((.((.((((....(((.(((....))).))))))).)))))))).)).. ( -37.30)
>DroEre_CAF1 8860 96 - 1
AUUGUGGC---ACAUUUUCCAC----CGACUCGUGGACAUAUUCACCUGCUGCAGGCUGCGACUGAUGCUGGCCAGGAGGCAGGCGUUGAAGCUGUAGGAGAA
...((((.---......(((((----......))))).....))))((.((((((.((.((((....(((.(((....))).))))))).)))))))).)).. ( -30.20)
>DroYak_CAF1 5261 100 - 1
AUUGGGGC---ACAUGAACCUGCAUGUGAUGCGUGUGCAUAUUCACCUGCUGCAGGCUGCGACUGAUGCUGGCCAGGAGGCAGGCAUUGAAGCUGUAGGAGAA
.(((.(((---(..((((..((((..((...))..))))..))))..)))).))).(((((.((((((((.(((....))).))))))..)).)))))..... ( -35.50)
>DroMoj_CAF1 11298 76 - 1
----AAUC-----------------------UGCAGCGAGACUCACCUGCUGCAGGGUGCGACUGAUGCUGGCCAGGAGGCAGGCAUUGAAGCUGUACGAGAA
----..((-----------------------((((((.((......))))))))))(((((.((((((((.(((....))).))))))..)).)))))..... ( -31.30)
>consensus
_____GGC___ACAUUGUCCAG____CGAUUCGUGGACAUAUUCACCUGCUGCAGGCUGCGACUGAUGCUGGCCAGGAGGCAGGCAUUGAAGCUGUAGGAGAA
..........................................((.(((((.((((.......))((((((.(((....))).))))))...)).))))).)). (-21.47 = -21.38 +  -0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:44:34 2006