Locus 7656

Sequence ID X_DroMel_CAF1
Location 19,067,347 – 19,067,446
Length 99
Max. P 0.764797
window12568

overview

Window 8

Location 19,067,347 – 19,067,446
Length 99
Sequences 4
Columns 108
Reading direction reverse
Mean pairwise identity 65.88
Mean single sequence MFE -36.60
Consensus MFE -21.48
Energy contribution -23.10
Covariance contribution 1.62
Combinations/Pair 1.19
Mean z-score -1.30
Structure conservation index 0.59
SVM decision value 0.51
SVM RNA-class probability 0.764797
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 19067347 99 - 22224390
AAGGGUUGCUCCUGCUCC------UGUUCCUGCUCCUGCUCCAAUUGCUGUUGCGACGAGGCCGCUGGAUAGUUAUCCGCCGGCGGUGG---CUGCGUGGUGGUUUCA
....(((((..(.((...------.(((...((....))...))).)).)..)))))((((((((((..((((((.(((....))))))---)))..)))))))))). ( -33.60)
>DroPse_CAF1 20996 93 - 1
N------NNNNNNNNNNN------NNNNNNNNNNNNNNNNNNN---NNNNNNGGGAGGAUGCCGCCGGAUAGUUGUCGGCCGGCGGCAGCUGCUGCGUGGUCGUCUCC
.------...........------...................---.......(((((..((((((((.(((((((((.....)))))))))))).)))))..))))) ( -29.00)
>DroSec_CAF1 18953 105 - 1
AAGGAUUGCUCCUGCUCCUGCUCCUGCUCUUGCUCCUGCUCCAGUUGCUGUUGCGACGAGGCCGCUGGAUAGUUAUCCGCCGGCGGUGG---CUGCGUAGUGGUCUCA
..(((..((....((....((....))....))....))))).(((((....)))))((((((((((..((((((.(((....))))))---)))..)))))))))). ( -42.70)
>DroSim_CAF1 20888 105 - 1
AAGGAUUGCUCCUGCUCCUGCUCCUGUUCCUGCUCCUGCUCCAGUUGCUGUUGCGACGAGGCCGCUGGAUAGUUAUCCGCCGGCGGUGG---CUGCGUAGUGGUCUCA
..(((..((....((....((....))....))....))))).(((((....)))))((((((((((..((((((.(((....))))))---)))..)))))))))). ( -41.10)
>consensus
AAGGAUUGCUCCUGCUCC______UGUUCCUGCUCCUGCUCCAGUUGCUGUUGCGACGAGGCCGCUGGAUAGUUAUCCGCCGGCGGUGG___CUGCGUAGUGGUCUCA
.((((....))))..............................(((((....)))))((((((((((..(((....(((((...)))))...)))..)))))))))). (-21.48 = -23.10 +   1.62)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:44:27 2006