| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 18,924,215 – 18,924,313 |
| Length | 98 |
| Max. P | 0.971908 |
| Location | 18,924,215 – 18,924,313 |
|---|---|
| Length | 98 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 73.93 |
| Mean single sequence MFE | -31.54 |
| Consensus MFE | -14.70 |
| Energy contribution | -14.40 |
| Covariance contribution | -0.30 |
| Combinations/Pair | 1.38 |
| Mean z-score | -2.36 |
| Structure conservation index | 0.47 |
| SVM decision value | 1.68 |
| SVM RNA-class probability | 0.971908 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 18924215 98 + 22224390 AUGGCAGGCGACAGUUUCAUGUCAACAGAAA--CAGGAACAGCAACUGUUCGCUCGGCCA-------------CGAAGAGAAAAUGGCCAGU--AGUCAGCACUAUUUGGCCAUA .((((.(((....(((((.((....))))))--)..((((((...)))))))))..))))-------------..........(((((((((--(((....)))).)))))))). ( -34.40) >DroPse_CAF1 200801 103 + 1 ---GGAGAGGACAGUUUCAUGUCAACAGAAA--U-------GAUUCUGGGCUCUCGGCUCUGGGCCCUGGUAGUGCCAGGGAAAUGGCCAACCAGCUCAGCACUUUUCGCUCGUA ---.(((((..(((..((((.((....)).)--)-------))..)))..)))))((((.(...((((((.....))))))..).)))).((.(((............))).)). ( -38.80) >DroSec_CAF1 157976 98 + 1 AUGGCAGGCGACAGUUUCAUGUCAACAGAAA--CAGGAACAGCAACUGUUCGCUCGGUCA-------------CGAAGAGAAAAUGGCCAGU--AGUCAGCACUUUUUGGCCAUA (((((....(((.(((((.((....))))))--)..((((((...)))))).....))).-------------(((((((....((((....--.))))...)))))))))))). ( -30.20) >DroEre_CAF1 151317 98 + 1 AUGGCAGGCGACAGUUCCAUGUCAACAGAAA--CAGGAACAGCAACUGUUCGCUUGGCCA-------------CGAAGAGAAAAUGGCCAGU--AGUCAGCACUUUUUGGCCAUA .((((((((((((......))))........--...((((((...)))))))))).))))-------------..........((((((((.--(((....)))..)))))))). ( -33.50) >DroYak_CAF1 149922 100 + 1 GUGGCAGGCGACAGUUUCAUGUCAACAGAAACACAGGAACAGCAACUGUUCGCACGGCCA-------------CGAAGAGAAAAUGGCCCGU--AGUCAGCACUUUUUGGCCAUA (((((..((....(((((.((....)))))))....((((((...))))))))...))))-------------).........((((((...--(((....)))....)))))). ( -33.90) >DroAna_CAF1 90246 83 + 1 ---------GAUAGUUUCCUGCCAAUAGAAA--CC------GAAACUGUUCGCUUGGCCA-------------ACAAGAGAAAAUGGCCAAC--AGUCAGCACUUUUUGGUCGUA ---------.((((((((.............--..------))))))))((.((((....-------------.)))).))..((((((((.--(((....)))..)))))))). ( -18.46) >consensus AUGGCAGGCGACAGUUUCAUGUCAACAGAAA__CAGGAACAGCAACUGUUCGCUCGGCCA_____________CGAAGAGAAAAUGGCCAGU__AGUCAGCACUUUUUGGCCAUA .........((((......))))......................((.((((.....................)))).))...((((((((...(((....)))..)))))))). (-14.70 = -14.40 + -0.30)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:42:52 2006