| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 18,875,209 – 18,875,314 |
| Length | 105 |
| Max. P | 0.996660 |
| Location | 18,875,209 – 18,875,314 |
|---|---|
| Length | 105 |
| Sequences | 3 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 78.32 |
| Mean single sequence MFE | -21.19 |
| Consensus MFE | -21.00 |
| Energy contribution | -21.00 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -0.80 |
| Structure conservation index | 0.99 |
| SVM decision value | 2.73 |
| SVM RNA-class probability | 0.996660 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 18875209 105 - 22224390 GGGGGCGCCAGCGUGCAACACGGCGGCUUAAUUGCUGAAACGCCCCACCAACCGAACCACCCAAGCAGCCCACAGCCCACAGCCCACAUCCCAUAUCCCAUAUCC .((((((....((((...)))).((((......))))...))))))..................((........))............................. ( -21.30) >DroSec_CAF1 111420 99 - 1 GGGGGCGCCAGCGUGCAACACGGCGGCUUAAUUGCUGAAACGCCCCACCAAGUGAACCACCCAACCAGCCAAC------CAGCCCACAUCCCAUAUCCCAUCACC .((((((....((((...)))).((((......))))...)))))).....(((...................------.....))).................. ( -21.26) >DroYak_CAF1 109139 83 - 1 GGGGGCGCCAGCGUGCAACACGGCGGCUUAAUUGCUGAAACGCCCCACCAACCAAACCACCCAACUACC------------ACCCACAUCUC----------CAC .((((((....((((...)))).((((......))))...)))))).......................------------...........----------... ( -21.00) >consensus GGGGGCGCCAGCGUGCAACACGGCGGCUUAAUUGCUGAAACGCCCCACCAACCGAACCACCCAACCAGCC_AC______CAGCCCACAUCCCAUAUCCCAU_ACC .((((((....((((...)))).((((......))))...))))))........................................................... (-21.00 = -21.00 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:42:38 2006