Locus 7570

Sequence ID X_DroMel_CAF1
Location 18,841,865 – 18,841,964
Length 99
Max. P 0.997790
window12426

overview

Window 6

Location 18,841,865 – 18,841,964
Length 99
Sequences 4
Columns 113
Reading direction reverse
Mean pairwise identity 74.96
Mean single sequence MFE -20.20
Consensus MFE -13.59
Energy contribution -13.40
Covariance contribution -0.19
Combinations/Pair 1.06
Mean z-score -2.44
Structure conservation index 0.67
SVM decision value 2.93
SVM RNA-class probability 0.997790
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18841865 99 - 22224390
UGCUCCACCAGCUCCACCAGC--------------UCCCUCUUCUCAUCCAUUUUUGCUAGCUGCAUUUGAAUGCCUCAGCUGCCUGCUGGCAAUUCGAUUUCAUGCUGCAAU
(((..((..((((.....)))--------------)..................((((((((.(((.((((.....)))).)))..))))))))..........))..))).. ( -23.10)
>DroPse_CAF1 108553 80 - 1
UACAUCCCCAGCAGCCCCA---------------------------AUCCACG------UUCUGUAUUUGAAUGCCUCAGCUGCCUGCUGGCAAUUCGAUUUCAUGCUGCAAU
..........(((((...(---------------------------(((..((------(((.......)))))..(((((.....)))))......))))....)))))... ( -19.10)
>DroSec_CAF1 78531 107 - 1
UACUACUCCUGCUCCACCACCACAGCGUCCCC------CCCUUCUCAUCCAUUUUUGCUCUCUGCAUUUGAAUGCCUCAGCUGCCUGCUGGCAAUUCGAUUUCAUGCUGCAAU
......................((((((....------.................(((.....))).(((((((((..(((.....)))))).))))))....)))))).... ( -19.80)
>DroSim_CAF1 59140 113 - 1
UACUACUCCUGCUCCACCACCACAGCGCCCCCCCUUCCCCCUUCUCAUCCAUUUUUGCUCUCUGCAUUUGAAUGCCUCAGCUGCCUGCUGGCAAUUCGAUUUCAUGCUGCAAU
......................(((((............................(((.....))).(((((((((..(((.....)))))).)))))).....))))).... ( -18.80)
>consensus
UACUACUCCAGCUCCACCACC_________________CCCUUCUCAUCCAUUUUUGCUCUCUGCAUUUGAAUGCCUCAGCUGCCUGCUGGCAAUUCGAUUUCAUGCUGCAAU
...............................................................(((((((((((((..(((.....)))))).))))))....))))...... (-13.59 = -13.40 +  -0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:42:17 2006