Locus 7568

Sequence ID X_DroMel_CAF1
Location 18,837,082 – 18,837,184
Length 102
Max. P 0.566632
window12423

overview

Window 3

Location 18,837,082 – 18,837,184
Length 102
Sequences 4
Columns 105
Reading direction forward
Mean pairwise identity 88.28
Mean single sequence MFE -14.65
Consensus MFE -9.61
Energy contribution -9.79
Covariance contribution 0.19
Combinations/Pair 1.11
Mean z-score -1.94
Structure conservation index 0.66
SVM decision value 0.07
SVM RNA-class probability 0.566632
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18837082 102 + 22224390
UUUAUUCCUAU--UUUUAUGUGCUUGGCAGGAAUAAAAAGUACAAAAAGUGCAAAAAAAAAAG-AAAGAAAAAAUACAACAAAACCUGGGAAUAACAGAAACGGU
.((((((((((--((((((.(((...)))...)))))))((((.....))))...........-......................))))))))).......... ( -15.70)
>DroSec_CAF1 73847 102 + 1
UUUAUUCCUAU--UUUUAUGUGCAUGGUAGGAAUAAAAAGUACAAAAAGUGCAAAAA-AAAAGAAAAAAGAAAAUACAACAAAACCUGGGAAUAACAGAAACGGU
(((((((((((--(...........))))))))))))..((((.....)))).....-...........................(((.......)))....... ( -16.20)
>DroSim_CAF1 54330 103 + 1
UUUAUUCCUAU--UUUUAUGUGCAUGGGAGGAAUAAAAAGUACAAAAAGUGCAAAAAAAAAAGAAAAAAGGAAACACAACAAAACCUGGGAAUAACAGAAACGGU
.(((((((((.--((((((....))))))((........((((.....)))).................(....).........))))))))))).......... ( -16.20)
>DroEre_CAF1 71452 99 + 1
UUUAUUCCUUUUUUUUUAUGUGCAUGGGAGGAAUAAAAAGUACCAAAAAGAGAGAAAA------AAAGAGAAAAUACAACAAAACCAGGGAAUAACAGAAACGGU
....(((((((((((((.......(((...............))).......))))))------)))).)))................................. ( -10.50)
>consensus
UUUAUUCCUAU__UUUUAUGUGCAUGGGAGGAAUAAAAAGUACAAAAAGUGCAAAAAAAAAAG_AAAAAGAAAAUACAACAAAACCUGGGAAUAACAGAAACGGU
.(((((((((...((((((.............)))))).((((.....))))..................................))))))))).......... ( -9.61 =  -9.79 +   0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:42:15 2006