| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 18,784,981 – 18,785,082 |
| Length | 101 |
| Max. P | 0.928088 |
| Location | 18,784,981 – 18,785,082 |
|---|---|
| Length | 101 |
| Sequences | 3 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 83.78 |
| Mean single sequence MFE | -10.77 |
| Consensus MFE | -10.67 |
| Energy contribution | -10.67 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -0.67 |
| Structure conservation index | 0.99 |
| SVM decision value | 1.19 |
| SVM RNA-class probability | 0.928088 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 18784981 101 + 22224390 CACAAAA-----------AAACACACACACAGAACAAAUUAAA---AAACAGAUGGAGAAAACAUAAAAAACUGUCAUGUGCUUGCCUCUGAAGUCACUGAA-AAUGUCACUGUCU .......-----------..........((((...........---...((((.((.....((((...........)))).....))))))..(.((.(...-.))).).)))).. ( -10.50) >DroSec_CAF1 31452 112 + 1 CACAAAAAAAAAAAAAAAAAACACACACACAGAACAAAUUAAA---AAACAGAUGGAGAAAACAUAAAAUACUGUCAUGUGCUUGCCUCUGAAGUCACUGAA-AAUGUCACUGUCU ............................((((...........---...((((.((.....((((...........)))).....))))))..(.((.(...-.))).).)))).. ( -10.50) >DroYak_CAF1 29685 96 + 1 UACAAAA-----------------AAACACAGAACAAAUUAAAAAAAAACAGAUGGAGAAAACAUAAAAAACUGUCAUGUGCUUGCCUCUGAAGU---UGAAAAAUGUCACUGUCU .......-----------------....((((.................((((.((.....((((...........)))).....))))))..((---(....)))....)))).. ( -11.30) >consensus CACAAAA___________AAACACACACACAGAACAAAUUAAA___AAACAGAUGGAGAAAACAUAAAAAACUGUCAUGUGCUUGCCUCUGAAGUCACUGAA_AAUGUCACUGUCU ............................((((.................((((.((.....((((...........)))).....)))))).......(((......))))))).. (-10.67 = -10.67 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:41:07 2006