| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 18,781,223 – 18,781,328 |
| Length | 105 |
| Max. P | 0.599543 |
| Location | 18,781,223 – 18,781,328 |
|---|---|
| Length | 105 |
| Sequences | 4 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 84.63 |
| Mean single sequence MFE | -21.08 |
| Consensus MFE | -15.24 |
| Energy contribution | -16.05 |
| Covariance contribution | 0.81 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.56 |
| Structure conservation index | 0.72 |
| SVM decision value | 0.13 |
| SVM RNA-class probability | 0.599543 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 18781223 105 + 22224390 CCGCUUAAGUGGCUCAAUGCUCAUUGAAAUUUGAGGCUGGAACCGCGCUGCUUCCUUCUU---CUCCUCAACCUUCUUA--GCCACAUACCAUCCUCCUCCGCAUUUACA ........((((((((((....)))))...((((((..((((..((...))....)))).---..))))))........--)))))........................ ( -20.30) >DroSec_CAF1 27701 106 + 1 CCACUUAAGUGGCUCAGUGCUCAUUGAAAUUUGAGGCUGGAACCGCGCAGCUUCCUUCUU---CUCCUCAGCCUCCUUAGAGCCACCUACCAUCCUCCUCCGCAUUCCC- ........(((((((((.(((....(((....(((((((........)))))))....))---).....))))).....))))))).......................- ( -25.00) >DroEre_CAF1 26200 105 + 1 CCGCUUAAGUGGCUCAAUGCUCAUUGAAAUUUGAGGCUGGAACCGCGCAGCUUCCUUCUA---UUCCUCCGUCUCCUCA--ACCAGCGCCCAUCCUCCUCCGCCUCCUCA ........(.((((((((....))))).....((((..(((...((((............---................--....))))...))).)))).))).).... ( -20.45) >DroYak_CAF1 25891 105 + 1 CCGCUUAAGUGGCUCAAUGCUCAUUGAAAUUUGAGUCUGGAACCGCGCAGCUUCCUUCUACAACUCCUCAUCCUCCUCG--GCCACCUUCCAUCCACCUCCGCCUCC--- ..(((...((((.((...(((((........)))))...)).))))..)))...........................(--((..................)))...--- ( -18.57) >consensus CCGCUUAAGUGGCUCAAUGCUCAUUGAAAUUUGAGGCUGGAACCGCGCAGCUUCCUUCUA___CUCCUCAGCCUCCUCA__GCCACCUACCAUCCUCCUCCGCAUCC_C_ ........((((((((((....))))).....(((((((........)))))))...........................)))))........................ (-15.24 = -16.05 + 0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:40:57 2006