| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 18,712,810 – 18,712,924 |
| Length | 114 |
| Max. P | 0.558770 |
| Location | 18,712,810 – 18,712,924 |
|---|---|
| Length | 114 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 76.82 |
| Mean single sequence MFE | -46.07 |
| Consensus MFE | -23.22 |
| Energy contribution | -26.62 |
| Covariance contribution | 3.40 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.79 |
| Structure conservation index | 0.50 |
| SVM decision value | 0.05 |
| SVM RNA-class probability | 0.558770 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 18712810 114 - 22224390 GGAGCAGCAGGCGCACCAGCCGCUGGUAGCCCGUACCCAUGGGCAGUGCCAGCGACACGUUGUUAAAGUUGCUGAUGGUAGUGGCUUAGCGACUGCAGUUGGUACU------GAUGGGGA ..(.((((.(((......))))))).)..(((((.((....))((((((((((..((.((((((((.((..(((....)))..))))))))))))..)))))))))------)))))).. ( -52.90) >DroSec_CAF1 14204 114 - 1 GGAGCAGCAGGCGCAUCAGCCGCUGGUAGCCCGUGCCCGUGGGCAAUGCCAGCGACACGUUGUUAAAGUUGCUGAUGGUAGUGGCUUAGCGACUGCAGUUGGUACU------GAUGGGGA ..(.((((.(((......))))))).)..((((((((....)))..(((((((..((.((((((((.((..(((....)))..))))))))))))..)))))))..------.))))).. ( -49.70) >DroEre_CAF1 13425 114 - 1 GGAACAGCAGGCGCACCAGCCACUGGUAGCCCGUGCCCGUGGGCAGUGCCAGCGACACGUUGUUAAAGUUGCUGAUGGUAGUGGCUUAGCGACUGCAGUUGGUACU------GAUGGGGG ......((.(((..(((((...))))).))).)).(((((...((((((((((..((.((((((((.((..(((....)))..))))))))))))..)))))))))------)))))).. ( -51.00) >DroYak_CAF1 13674 114 - 1 GGAGCAGCAGGCGCACCAGCCGCUGGUAGCCCGUGCCCGUGGGCAGUGCCAGCGACACGUUGUUAAAGUUGCUGAUGGUAGUGGCUUAGCGACUGCAGUUGGUACU------GAUGGGGG ..(.((((.(((......))))))).)..((((((((....)))(((((((((..((.((((((((.((..(((....)))..))))))))))))..)))))))))------.))))).. ( -54.20) >DroMoj_CAF1 12491 114 - 1 GCAGCAUGAGACGCGCCACC----UGUAGA--GCAGCCGCGGGCAGCGCCUGCGAUACGUUGUUAAAGAUGCUGAUGGAAUGGGCUCACCGACUGCACAUGAUGAUAGCCCACAUGCGGA ...(((((.......(((.(----.(((.(--((((((((((((...)))))))....)))))).....))).).)))..((((((((.((........)).)))..))))))))))... ( -36.20) >DroPer_CAF1 15077 93 - 1 AUGCGAUUAGGCGCGCCAG---------------------GGGCAGCGCCGCUGGCACGUUGUUAAAGCUGCUGAUGAUAGUGACUGAGGGACUGCAGCUGGUACU------GAUGGGGG .(.(.((((((((.(((((---------------------.(((...))).))))).)))......((((((......................))))))....))------))).).). ( -32.45) >consensus GGAGCAGCAGGCGCACCAGCCGCUGGUAGCCCGUGCCCGUGGGCAGUGCCAGCGACACGUUGUUAAAGUUGCUGAUGGUAGUGGCUUAGCGACUGCAGUUGGUACU______GAUGGGGA ......((((.(((...((((((((.((((((((....)))))).....(((((((...........))))))).)).))))))))..))).))))........................ (-23.22 = -26.62 + 3.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:40:33 2006