| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 18,710,892 – 18,710,992 |
| Length | 100 |
| Max. P | 0.544969 |
| Location | 18,710,892 – 18,710,992 |
|---|---|
| Length | 100 |
| Sequences | 4 |
| Columns | 100 |
| Reading direction | reverse |
| Mean pairwise identity | 86.83 |
| Mean single sequence MFE | -48.08 |
| Consensus MFE | -37.85 |
| Energy contribution | -40.73 |
| Covariance contribution | 2.88 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.42 |
| Structure conservation index | 0.79 |
| SVM decision value | 0.02 |
| SVM RNA-class probability | 0.544969 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 18710892 100 - 22224390 UGCUCCUGGCGGUGGUUGCGGCUGGAAGCCAGAGGGCGGUUGACCUGGAUGUCCUUGCUGCCCAGGGUGACCUGGUGGCGCCUGCCCGGCCAUCUGAACC .((.....))((((((((.(((.((..((((..(((((((.(((......)))...)))))))(((....)))..)))).)).)))))))))))...... ( -48.50) >DroSec_CAF1 12321 100 - 1 UGCUCCUGGCAGUGGUUGCGGCUGGAAGCCAGAGGGCGGUUGGCCCGGAUGUCCUUGCUGCCCAGGGUGACCUGGUGGCGCCUGACCGCCCAUCUGAACC .(((.(..((.((....)).))..).)))(((((((((((((((..((....))..((..((.(((....)))))..))))).)))))))).)))).... ( -53.90) >DroEre_CAF1 11540 94 - 1 UG------GCGGUGGUUGCUGCUGGAAGCCAGACGGCGGUUGGCCCGGAUGACCUUGCUGCCCGGGAUGACCUGGUGGCGCCUGACCUCCCAUCUGAACC ..------..(((((..((((((((...)))).))))(((((((..((....))..((..((.((.....)).))..))))).))))..)))))...... ( -38.00) >DroYak_CAF1 11781 97 - 1 UGCUCCAGGCGGUGGCUGCUGCUGGAAGCCAGAGGGCGGUUGGCCCGGAUGACCUUG---ACCGGGGUGACCCGGUGGCGCCUGACCACCCAUCUGCACC .(((((((.((((....)))))))).)))(((((((.(((((((((((....))...---((((((....)))))))).))).)))).))).)))).... ( -51.90) >consensus UGCUCCUGGCGGUGGUUGCGGCUGGAAGCCAGAGGGCGGUUGGCCCGGAUGACCUUGCUGCCCAGGGUGACCUGGUGGCGCCUGACCGCCCAUCUGAACC .(((.((((((((....)))))))).)))(((((((((((((((((((....)).......(((((....))))).)).))).)))))))).)))).... (-37.85 = -40.73 + 2.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:40:31 2006