| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 18,683,064 – 18,683,158 |
| Length | 94 |
| Max. P | 0.847098 |
| Location | 18,683,064 – 18,683,158 |
|---|---|
| Length | 94 |
| Sequences | 4 |
| Columns | 96 |
| Reading direction | reverse |
| Mean pairwise identity | 83.28 |
| Mean single sequence MFE | -19.20 |
| Consensus MFE | -11.10 |
| Energy contribution | -11.10 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.19 |
| Mean z-score | -2.63 |
| Structure conservation index | 0.58 |
| SVM decision value | 0.77 |
| SVM RNA-class probability | 0.847098 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 18683064 94 - 22224390 AUGAGCU--CUCCCUCGAAUUAGAGGGAGAGGGAAGAUGAAAGCAUAUCUUAUCACAUUAUCAUACCCAUAAAAAUAAACAAAGCAACAAGUGCUU ((((.((--(((((((......)))))))))((((((((......)))))).))......)))).................(((((.....))))) ( -25.80) >DroSec_CAF1 15394 93 - 1 AUGAGCA---UAUCUCGAAUUAGAGGGAGAGGGAAGAUGAAAGCAUGUCUUAUCAAAUUAUCAUACCCAUAAAAACAAACGAAGCAACAAGUGCUU ..(((((---(.((((......))))....(((...((((.((..((......))..)).)))).)))......................)))))) ( -15.70) >DroEre_CAF1 4631 95 - 1 AUA-CCAUAAUACCUCGAAUCAGAGGGAGAUGGAAGAUAAAUCUGUUGCUUAUCAAAUCACCAUACCCAUAAAAACAAACAAAGCAACAAGUGCUU ...-((((....((((......))))...))))(((....(..((((((((..............................))))))))..).))) ( -18.91) >DroYak_CAF1 2494 96 - 1 AUAAACAUAACACCUCGAAUUAGAGGGAGAAGGGAGAUAAAACAAAGUCUUAUCGAAUUAUCAUACCCAUAAAAACAAACAAAGCAACAAGUGCUU ............((((......)))).....(((.(((((.((...)).)))))((....))...))).............(((((.....))))) ( -16.40) >consensus AUAAGCA__AUACCUCGAAUUAGAGGGAGAGGGAAGAUAAAACCAUGUCUUAUCAAAUUAUCAUACCCAUAAAAACAAACAAAGCAACAAGUGCUU ............((((......))))..((...(((((........))))).))...........................(((((.....))))) (-11.10 = -11.10 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:40:22 2006