Locus 7477

Sequence ID X_DroMel_CAF1
Location 18,662,194 – 18,662,314
Length 120
Max. P 0.853057
window12265

overview

Window 5

Location 18,662,194 – 18,662,314
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 88.30
Mean single sequence MFE -26.60
Consensus MFE -19.63
Energy contribution -19.63
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -2.95
Structure conservation index 0.74
SVM decision value 0.80
SVM RNA-class probability 0.853057
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18662194 120 - 22224390
CAUAGAAAGCACAAAGAGAAUUCAGAUAUUCAGAUAAUCGGAUAUUCGGAUAUUCCGAUAUUCGGAUAUUCCGAAAUUCGGAUAUCCCAUAUAAAGAGAUUGUUUACCAGCAAAACGGUU
........((.......((((......))))((((((((((((((.(((.....)))))))))((((((.(((.....)))))))))..........))))))))....))......... ( -31.00)
>DroSec_CAF1 7194 102 - 1
CAUAGAAAGCACAAAGAGAAUUCAUAUAUUCAGAUAAUCGGAUAUUCGGAUAUUCCGAUAUUC----------------GGAUAUCCCAUAUAAA--GAUUGUUUACCAGCAAAUCGGUU
........((.......((((......))))((((((((((((((((((((((....))))))----------------))))))))........--))))))))....))......... ( -24.40)
>DroSim_CAF1 5375 102 - 1
CAUAGAAAGCACAAAGAGAAUUCAGAUAUUCAGAUAAUCGGAUAUUCGGAUAUUCCGAUAUUC----------------GGAUAUCCCAUAUAAA--GAUUGUUUACCAGCAAAUCGGUU
........((.......((((......))))((((((((((((((((((((((....))))))----------------))))))))........--))))))))....))......... ( -24.40)
>consensus
CAUAGAAAGCACAAAGAGAAUUCAGAUAUUCAGAUAAUCGGAUAUUCGGAUAUUCCGAUAUUC________________GGAUAUCCCAUAUAAA__GAUUGUUUACCAGCAAAUCGGUU
........((.......((((......))))((((((((((((((.(((.....)))))))))................((.....)).........))))))))....))......... (-19.63 = -19.63 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:39:54 2006