| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 18,539,278 – 18,539,382 |
| Length | 104 |
| Max. P | 0.779843 |
| Location | 18,539,278 – 18,539,382 |
|---|---|
| Length | 104 |
| Sequences | 3 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 85.23 |
| Mean single sequence MFE | -26.18 |
| Consensus MFE | -20.14 |
| Energy contribution | -21.69 |
| Covariance contribution | 1.56 |
| Combinations/Pair | 1.05 |
| Mean z-score | -2.18 |
| Structure conservation index | 0.77 |
| SVM decision value | 0.55 |
| SVM RNA-class probability | 0.779843 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 18539278 104 - 22224390 CUCCUAAUUAUGACGGAUAAGUGGGUUCUUUUUUGGCCGAAUUUUGGCACACACCUCAGCCCACAUUAGCCAUGUAUGU-----CACUUACCAUAUCCCAUUUCGGCCA ..((((.((((.....)))).))))........((((((((...((((....................)))).(((((.-----.......))))).....)))))))) ( -21.45) >DroSec_CAF1 4138 107 - 1 CUUUUAAUUAUGACGGAUAAGUUGGUCCUUUUUUGGCCGAACUCUGGCA--CACCUCCGCACACACAGGCCAUGCCACUUGGCCAACUUACCAUAUCCCAUUUUGGCCA ..............((.((((((((((......(((((........((.--.......)).......)))))........)))))))))))).....((.....))... ( -27.00) >DroSim_CAF1 4225 107 - 1 CUCCUAAUUAUGACGGAUAAGUUGGUCCUUUUUUGGCCGAACUCUGGCA--CACCUCCGCCCACACUGGCCAUGUCACUUGGCCAACUUACCAUAUCCCAUUUCGGCCA ..............((((......)))).....((((((((....(((.--.......))).....((((((.......))))))................)))))))) ( -30.10) >consensus CUCCUAAUUAUGACGGAUAAGUUGGUCCUUUUUUGGCCGAACUCUGGCA__CACCUCCGCCCACACUGGCCAUGUCACUUGGCCAACUUACCAUAUCCCAUUUCGGCCA ..............((.((((((((((......(((((.......(((..........)))......)))))........))))))))))))................. (-20.14 = -21.69 + 1.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:38:48 2006