Locus 7427

Sequence ID X_DroMel_CAF1
Location 18,536,885 – 18,537,039
Length 154
Max. P 0.808584
window12178 window12179

overview

Window 8

Location 18,536,885 – 18,537,005
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 98.89
Mean single sequence MFE -30.93
Consensus MFE -29.82
Energy contribution -29.60
Covariance contribution -0.22
Combinations/Pair 1.03
Mean z-score -1.89
Structure conservation index 0.96
SVM decision value 0.64
SVM RNA-class probability 0.808584
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18536885 120 - 22224390
UUAACGUAUCAGCAUCUCGGCCACAUUUGGCCAACGAAUAAUGCCGGACAGGAUGUGCAGCACUUGAAUGGCAAUUAAAAGCACACUUCAUUUCCAUCAGGAUCACAAAUUAUUCGAGCA
...........((.....(((((....)))))..((((((((((((..((((.((.....))))))..))))....................(((....)))......)))))))).)). ( -31.60)
>DroSec_CAF1 1871 120 - 1
UUAACGUAUCAGCAUCUCGGCCACAUUUGGCCAACGAGUAAUGCCGGACAGGAAGUGCAGCACUUGAAUGGCAAUUAAAAGCACACUUCAUUUCCAUCAGGAUCACAAAUUAUUCGAGCA
...........((.....(((((....)))))..((((((((....((...((((((..((..((((.......))))..)).))))))...(((....)))))....)))))))).)). ( -30.60)
>DroSim_CAF1 1914 120 - 1
UUAACGUAUCAGCAUCUCGGCCACAUUUGGCCAACGAGUAAUGCCGGACAGGAAGUGCAGCACUUGAAUGGCAAUUAAAAGCACACUUCAUUUCCAUCAGGAUCACAAAUUAUUCGAGCA
...........((.....(((((....)))))..((((((((....((...((((((..((..((((.......))))..)).))))))...(((....)))))....)))))))).)). ( -30.60)
>consensus
UUAACGUAUCAGCAUCUCGGCCACAUUUGGCCAACGAGUAAUGCCGGACAGGAAGUGCAGCACUUGAAUGGCAAUUAAAAGCACACUUCAUUUCCAUCAGGAUCACAAAUUAUUCGAGCA
...........((.....(((((....)))))..((((((((((.(.((.....)).).)).(((((.(((.(((...(((....))).))).)))))))).......)))))))).)). (-29.82 = -29.60 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 9

Location 18,536,925 – 18,537,039
Length 114
Sequences 3
Columns 114
Reading direction reverse
Mean pairwise identity 98.83
Mean single sequence MFE -32.63
Consensus MFE -31.80
Energy contribution -31.80
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.63
Structure conservation index 0.97
SVM decision value 0.31
SVM RNA-class probability 0.682001
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18536925 114 - 22224390
GUGAUGUUGAUGGAGAAACCUUUUAGUCCCUUUCUUAACGUAUCAGCAUCUCGGCCACAUUUGGCCAACGAAUAAUGCCGGACAGGAUGUGCAGCACUUGAAUGGCAAUUAAAA
(.((((((((((((((((............))))))....)))))))))).)(((((....))))).........(((((..((((.((.....))))))..)))))....... ( -34.30)
>DroSec_CAF1 1911 114 - 1
GUGAUGUUGAUGGAGAAACCUUUUAGUCCCUUUCUUAACGUAUCAGCAUCUCGGCCACAUUUGGCCAACGAGUAAUGCCGGACAGGAAGUGCAGCACUUGAAUGGCAAUUAAAA
(.((((((((((((((((............))))))....)))))))))).)(((((....))))).........(((((..((((..........))))..)))))....... ( -31.80)
>DroSim_CAF1 1954 114 - 1
GUGAUGUUGAUGGAGAAACCUUUUAGUCCCUUUCUUAACGUAUCAGCAUCUCGGCCACAUUUGGCCAACGAGUAAUGCCGGACAGGAAGUGCAGCACUUGAAUGGCAAUUAAAA
(.((((((((((((((((............))))))....)))))))))).)(((((....))))).........(((((..((((..........))))..)))))....... ( -31.80)
>consensus
GUGAUGUUGAUGGAGAAACCUUUUAGUCCCUUUCUUAACGUAUCAGCAUCUCGGCCACAUUUGGCCAACGAGUAAUGCCGGACAGGAAGUGCAGCACUUGAAUGGCAAUUAAAA
(.((((((((((((((((............))))))....)))))))))).)(((((....))))).........(((((..((((..........))))..)))))....... (-31.80 = -31.80 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:38:38 2006