Locus 7364

Sequence ID X_DroMel_CAF1
Location 18,362,670 – 18,362,784
Length 114
Max. P 0.508015
window12066

overview

Window 6

Location 18,362,670 – 18,362,784
Length 114
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 80.58
Mean single sequence MFE -44.02
Consensus MFE -28.50
Energy contribution -29.98
Covariance contribution 1.47
Combinations/Pair 1.16
Mean z-score -1.35
Structure conservation index 0.65
SVM decision value -0.05
SVM RNA-class probability 0.508015
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18362670 114 - 22224390
UGACCACCUUCACCAUGAGCUCCGUUUCGUUGGCAUCGGCUGCCACGGCCACCGAAGCGGCUGCUUGAGGAGAUCCUGCUC------CUGCUGCAGCCGUUUCUGGCGGAGAUUUCAGAU
...............(((.((((....(((.((((.....)))))))((((..(((((((((((...(((((......)))------))...)))))))))))))))))))...)))... ( -49.90)
>DroSec_CAF1 7404 114 - 1
UGAUCACCUUUACCAUGAGCUCCGUUUCGUUGGCAUCGGCCGCCACGGCCACCGAAGCGGCUGCUUGGGGAGAUCCUGCUC------CUGCUCCAGCCGUUGCUGGCGGAGAUUUCGGAU
....................((((((((((..((...(((((...))))).....((((((((....(((((......)))------))....))))))))))..))))))....)))). ( -44.90)
>DroAna_CAF1 9840 102 - 1
UGAUCAGCUUCACGAGGCGCUCCGUUUCGCUGGCAUCCUCCUUGAUGGCCACGGCAGCGGCGCCUCCCGGAGAUCCAGCUC------C------------UUCUGGCGGCGAUUUCAGGU
(((......))).(((((((..(((((((.(((((((......))).))))))).)))))))))))((.((((((..((((------(------------....)).))))))))).)). ( -38.50)
>DroSim_CAF1 8451 114 - 1
UGAUCACCUUUACCAUGAGCUCCGUUUCGUUGGCAUCGGCCGCCACGGCCACCGAAGCGGCUGCUUGGGGAGAUCCUGCUC------CUGCUCCAGCCGUUGCUGGCGGAGAUUUCGGAU
....................((((((((((..((...(((((...))))).....((((((((....(((((......)))------))....))))))))))..))))))....)))). ( -44.90)
>DroEre_CAF1 6409 120 - 1
CGACCACCUUCAGCAAAAGCUCCGUUUCGCUGGCAUCGGCCGCCACGGCCACCGAAGCGGCUGCUUGAGGAGAUCCUGCUCCUGCUCCUGCUCCAGCCGUUUCUGGCGGGGAUUUCAGAU
...((.((..((((.(((......))).))))((...(((((...)))))...((((((((((....(((((......)))))((....))..))))))))))..))))))......... ( -44.70)
>DroYak_CAF1 6441 102 - 1
UGACCACCUUCACCAUAAGCUCCGUUUCGUUGGCAUCGGCUGCCACGGCCAGCGCAGCGGCUGCUUGGGGAGAUC------------------CAGCUGUUUCUGGCGGGGAUUUCAGAU
............((.(((((.(((((.(((((((...((...))...))))))).)))))..)))))))((((((------------------(.(((......)))..))))))).... ( -41.20)
>consensus
UGACCACCUUCACCAUGAGCUCCGUUUCGUUGGCAUCGGCCGCCACGGCCACCGAAGCGGCUGCUUGGGGAGAUCCUGCUC______CUGCUCCAGCCGUUUCUGGCGGAGAUUUCAGAU
............((.(((((.((((((((.((((...(.....)...)))).))))))))..)))))))(((((((((((........................))))).)))))).... (-28.50 = -29.98 +   1.47)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:37:03 2006