a score=0
s X_DroMel_CAF1 18285113 99 + 22224390 GGGCCGAGCAUGUGUUGCGCUCUGCGGGC-UUACGAUAAUAACACAAUUAUGUACUUACGUAAUUAAAGUCGUAA-AGUGCACAAAA-------ACACACAG----AAACAA
s DroPse_CAF1 5189 106 + 1 GUAGACGGCAUGUGUUGCGCUCUGUGAGC-UUACGAUAAUAACACAAUUAUGUACUUACAUAAUUAAAGUCGUAA-AGUGCAAAAAAAAAACACACACACAG----AAACAA
s DroGri_CAF1 10563 92 + 1 GGAC------UGUG------UCCGUACGC-UUAUGAUAAUAACACAAUUAUGUACUUACAUAAUUAAAGUCGUAA-AGUGCACAAAAA------ACACAAACUAAGAAGCAA
s DroEre_CAF1 4741 76 + 1 G----------------------GCGGGC-UUACGAUAAUAACACAAUUAUGUACUUACGUAAUUAAAGUCGUAA-AGUGCACAA-A-------ACACACAG----AAACAA
s DroMoj_CAF1 6880 88 + 1 GCAC------CAAG------UCCUUGCGC-UUAUGAUAAUAACACAAUUAUGUACUUACAUAAUUAAAGUCGUAAAAGUGCACAAA--------ACACAGAC---AAAACAA
s DroPer_CAF1 5243 104 + 1 NNNNNNGGCAUGUGUUGCGCUCUGUGAGCCUUACGAUAAUAACACAAUUAUGUACUUACAUAAUUAAAGUCGUAA-AGUGCAAAGAAAA---ACACACACAG----AAACAA