Locus 7323

Sequence ID X_DroMel_CAF1
Location 18,273,409 – 18,273,518
Length 109
Max. P 0.930896
window11993

overview

Window 3

Location 18,273,409 – 18,273,518
Length 109
Sequences 5
Columns 114
Reading direction reverse
Mean pairwise identity 80.63
Mean single sequence MFE -29.24
Consensus MFE -18.67
Energy contribution -18.99
Covariance contribution 0.32
Combinations/Pair 1.17
Mean z-score -2.27
Structure conservation index 0.64
SVM decision value 1.21
SVM RNA-class probability 0.930896
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18273409 109 - 22224390
GUUUACAUAAUCUAGAUGCAA--CAUCUAGCAUCUGGUUUAGUUAGCAUGCGAGGUUGUUAUUGGCAAUUAGCUUAGUGGC---UUACAGAUCUAAUUAAACCAGAGAUGAAAA
.....(((...(((((((...--)))))))..((((((((((((((..((..((((..(((..(((.....))))))..))---)).))...)))))))))))))).))).... ( -33.80)
>DroSec_CAF1 573 101 - 1
GUUUACACAAUCUAGAUGACA--CAUCUAGCAUCUGGUUCAGUUUGCAUGCGAGGUUGUUAUUGGCAAUUAGC-----------UUACAGAUCUAAUUAGGCCAGAGAUUAAAA
...........(((((((...--)))))))..((((((..((((....((..(((((((.....)))))...)-----------)..)).....))))..))))))........ ( -22.60)
>DroSim_CAF1 808 109 - 1
GUUUACACAAUCUAGAUGACA--CAUCUAGCAUCUGGUUCAGUUAGCAUGCGAGGUUGUUAUUGGCAAUUAGCUUAGUGGC---UUACAGAUCUAAUUAAGCCAGAGAUUAAAA
...........(((((((...--)))))))..(((((((.((((((..((..((((..(((..(((.....))))))..))---)).))...)))))).)))))))........ ( -29.10)
>DroEre_CAF1 480 108 - 1
GCUUCCAUAAUCUAAAUGGCUGCGAUCUA--AUCUGGCUUAGUUGGCAUGCGAUGUUGUUAUUGGCAAUUAGCCUGCUGGC---UUACAGAUCUAAUU-AGCCGGAGAUUGAAA
.......((((((...((((((.......--(((((....(((..(((.((...(((((.....)))))..)).)))..))---)..))))).....)-))))).))))))... ( -34.70)
>DroYak_CAF1 585 109 - 1
GUUUUCAUAAUCUAGAUGGG-----UCUAACAUCUGGUUUAGUUGGUUUGCGAUGUUGUUAUUGGCAAUUAGCUUAGUUGUAAUCCGCUAAUCUAAUUCAACCAGAGAUUGAAA
.......(((((((((....-----))))...(((((((.((((((...(((..((((..((((((.....)).))))..)))).)))....)))))).))))))))))))... ( -26.00)
>consensus
GUUUACAUAAUCUAGAUGACA__CAUCUAGCAUCUGGUUUAGUUAGCAUGCGAGGUUGUUAUUGGCAAUUAGCUUAGUGGC___UUACAGAUCUAAUUAAGCCAGAGAUUAAAA
........((((((((((.....))))))...(((((((.((((((...((...(((((.....)))))..))...................)))))).))))))))))).... (-18.67 = -18.99 +   0.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:35:59 2006