| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 18,234,820 – 18,234,911 |
| Length | 91 |
| Max. P | 0.962128 |
| Location | 18,234,820 – 18,234,911 |
|---|---|
| Length | 91 |
| Sequences | 4 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 70.12 |
| Mean single sequence MFE | -24.82 |
| Consensus MFE | -9.61 |
| Energy contribution | -9.62 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.05 |
| Mean z-score | -3.02 |
| Structure conservation index | 0.39 |
| SVM decision value | 1.54 |
| SVM RNA-class probability | 0.962128 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 18234820 91 + 22224390 GAUGCAUA--UACA------------UACAUACAAAUGUAUCUAUGUAUGUAUCUAUUAACGCUGAUAUAUUCGUUUGCUGGUGCAAAUAUGGGAGGAUUUUCCA ((((((((--((.(------------(((((....))))))...))))))))))...................((((((....))))))...((((....)))). ( -21.70) >DroSec_CAF1 8819 73 + 1 GAUACAUA--------------------C------AUGUAUCUAUGCAUU------UCAAAGCUGAUAUAUUCGUGUGCUGGUGCAAAUAUGGGAGUAUUUUCCA ((((((..--------------------.------.))))))..((((((------.....(((((.....))).))...))))))......((((....)))). ( -15.80) >DroEre_CAF1 7838 98 + 1 GAUGCAUAUAUGCAUG-AGAUGCAUAUACAUACAUAUGUAUCUCAGCAUU------UGUACGCCGAUAUAUUCAUGGGCUUUUGCAAAUAUGGGAGGAUUUUCCA ....(((((((((.((-((((((((((......))))))))))))))))(------((((.(((.((......)).)))...))))))))))((((....)))). ( -31.50) >DroYak_CAF1 9083 93 + 1 GAUACAUA--UGCAUCUAGAUACAUUU----GUAUAUGUAUCUAUGCAUU------UGUACGAUGAUAUAUUCGUGUGCUGGUGCAAAUAUGGGAGGAUUUUCCA ((((((((--((((............)----)))))))))))..(((((.------.((((.((((.....))))))))..)))))......((((....)))). ( -30.30) >consensus GAUACAUA__UGCA____________U_C__ACAUAUGUAUCUAUGCAUU______UGAACGCUGAUAUAUUCGUGUGCUGGUGCAAAUAUGGGAGGAUUUUCCA (((((((............................)))))))........................((((((....(((....)))))))))((((....)))). ( -9.61 = -9.62 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:35:45 2006