Locus 7305

Sequence ID X_DroMel_CAF1
Location 18,205,497 – 18,205,596
Length 99
Max. P 0.871690
window11964

overview

Window 4

Location 18,205,497 – 18,205,596
Length 99
Sequences 5
Columns 112
Reading direction reverse
Mean pairwise identity 92.13
Mean single sequence MFE -16.62
Consensus MFE -14.11
Energy contribution -13.95
Covariance contribution -0.16
Combinations/Pair 1.06
Mean z-score -1.55
Structure conservation index 0.85
SVM decision value 0.87
SVM RNA-class probability 0.871690
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18205497 99 - 22224390
GGCAACAAAA---AAAACAGAAAAACAC-----ACAGCACACAGCGAAAAAA-----UCAACUUACUUUCUGAUGACAUCACUAAAAACGUUGCUGCUGAGAGGCUUUUGUU
((((((....---....((((((.....-----...((.....))((.....-----)).......)))))).((....))........))))))(((....)))....... ( -17.70)
>DroSec_CAF1 65637 100 - 1
GGCAACAAAAA--AAAACAGAAAAACAC-----ACAGCACACAGCGAAAAAA-----UCAACUUACUUUCUGAUGACAUCACUAAAAACGUUGCUGCUGAGAGGCUUUUGUU
((((((.....--....((((((.....-----...((.....))((.....-----)).......)))))).((....))........))))))(((....)))....... ( -17.70)
>DroSim_CAF1 64870 102 - 1
GGCAACAAAAAAAAAAACAGAAAAACAC-----ACAGCACACAGCGAAAAAA-----UCAACUUACUUUCUGAUGACAUCACUAAAAACGUUGCUGCUGAGAGGCUUUUGUU
((((((...........((((((.....-----...((.....))((.....-----)).......)))))).((....))........))))))(((....)))....... ( -17.70)
>DroEre_CAF1 59719 105 - 1
GGCAACAAAAA--AAAACAGAAAAACAC-----ACACCACACAGCAAAAAAAAACAGUCAACUUACUUUCUGAUGACAUCACUAAAAACGUUGCUGCUGAGAGGCCUUUGUU
((((((.....--....((((((.....-----.................................)))))).((....))........))))))(((....)))....... ( -13.76)
>DroYak_CAF1 59503 107 - 1
AGCAACAAAAAGAAAAACAGAAAAGCACACCACACUCCACACAGCGAAAAAA-----UCAACUUACUUUCUGAUGACAUCACUAAAAACGUUGCUGCUGAGAGGCUUUUGUU
((((((...........((((((.((.................))((.....-----)).......)))))).((....))........))))))(((....)))....... ( -16.23)
>consensus
GGCAACAAAAA__AAAACAGAAAAACAC_____ACAGCACACAGCGAAAAAA_____UCAACUUACUUUCUGAUGACAUCACUAAAAACGUUGCUGCUGAGAGGCUUUUGUU
((((((...........((((((...........................................)))))).((....))........))))))(((....)))....... (-14.11 = -13.95 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:35:33 2006