| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 18,165,616 – 18,165,714 |
| Length | 98 |
| Max. P | 0.668031 |
| Location | 18,165,616 – 18,165,714 |
|---|---|
| Length | 98 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 83.32 |
| Mean single sequence MFE | -30.51 |
| Consensus MFE | -23.94 |
| Energy contribution | -24.22 |
| Covariance contribution | 0.28 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.74 |
| Structure conservation index | 0.78 |
| SVM decision value | 0.28 |
| SVM RNA-class probability | 0.668031 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 18165616 98 + 22224390 GCAAGUUCAUUAAGCUUGUAAAUUGGCAAUCAACACCAAAGUUGCGGCUUUGUGUGGAAGCUAAUUAGCCUGUCUAUGCCACUGACAGGACUCUCGCG---------------- (((((((.....))))))).(((((((......(((((((((....)))))).)))...)))))))((((((((.........)))))).))......---------------- ( -29.10) >DroPse_CAF1 66056 114 + 1 GCAAGUUCAUUAAGCUUGUAAAUUGGCAAUCAACACCAAAGUUGUGGCUUUGUGUUGGAGUUAAUUAGCCUUUCUAUUCCACUGACAGGACAGCCACGGCGGAUGGUUGGAUGC (((((((.....)))))))......(((.(((((......(((((((((((.(((((((((..(........)..))))))...))).)).))))))))).....))))).))) ( -35.30) >DroEre_CAF1 23427 94 + 1 GCAAGUUCAUUAAGCUUGUAAAUUGGCAAUCAACACCAAAGUUGCGGCUUUGUGUGGGAGCUAAUUAGCCUGUCUAUGCCACUGACAGGACCUC-------------------- (((((((.....))))))).(((((((..(((.(((.(((((....)))))))))))..)))))))..((((((.........)))))).....-------------------- ( -29.60) >DroWil_CAF1 77595 106 + 1 GCAAGUUCAUUAAGCUUGUAAAUUGGCAAUCAACACCAAAGUUGCGGCUUUGUGUUAGAGUUAAUUAGCCCGUCUAUGCCACUGACAGGACGCAC--------UGCUUGAAUAU .(((((........(((((....(((((.(((((((.(((((....)))))))))).))(((....))).......)))))...)))))......--------.)))))..... ( -24.86) >DroYak_CAF1 25398 94 + 1 GCAAGUUCAUUAAGCUUGUAAAUUGGCAAUCAACACCAAAGUUGCGGCUUUGUGUGGGAGCUAAUUAGCCUGUCUAUGCCACUGACAGGACCCU-------------------- (((((((.....))))))).(((((((..(((.(((.(((((....)))))))))))..)))))))..((((((.........)))))).....-------------------- ( -29.60) >DroPer_CAF1 67484 114 + 1 GCAAGUUCAUUAAGCUUGUAAAUUGGCAAUCAACACCAAAGUUGUGGCUUUGUGUUGGAGUUAAUUAGCCUUUCUAUGCCACUGACAGGACAGCCACGGCGGAUGGUUGGAUGC (((((((.....)))))))......(((.(((((......(((((((((((.(((..(.((....(((.....))).))..)..))).)).))))))))).....))))).))) ( -34.60) >consensus GCAAGUUCAUUAAGCUUGUAAAUUGGCAAUCAACACCAAAGUUGCGGCUUUGUGUGGGAGCUAAUUAGCCUGUCUAUGCCACUGACAGGACACCC___________________ (((((((.....))))))).(((((((..((.((((.(((((....))))))))).)).)))))))..((((((.........))))))......................... (-23.94 = -24.22 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:35:17 2006