Locus 7286

Sequence ID X_DroMel_CAF1
Location 18,129,409 – 18,129,518
Length 109
Max. P 0.897427
window11937

overview

Window 7

Location 18,129,409 – 18,129,518
Length 109
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 85.42
Mean single sequence MFE -24.61
Consensus MFE -21.51
Energy contribution -22.32
Covariance contribution 0.81
Combinations/Pair 1.04
Mean z-score -1.88
Structure conservation index 0.87
SVM decision value 1.00
SVM RNA-class probability 0.897427
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18129409 109 - 22224390
AGUUAUGCCCCCCGUCAGCC-------G----CUGCCACCCACAAAACUAACCCACGCAAAGCCAUUAAAAAUGGCCUGGAAACGAAAUGAUUUUUAUCAUUAUCUGUGGGUGUGCAAAU
....................-------.----.(((((((((((.................(((((.....)))))..(....)((((((((....)))))).)))))))))).)))... ( -29.00)
>DroSec_CAF1 11764 108 - 1
AGUUAUGCCCCCCGUCACCC-------U----CCGCCACCCACAAAACUUACCCACGCAAAGCCAUUAAAAAUGGCCUGGAAACGAAAUGAUU-UUAUCAUUAUCUGUGGGCGUGCAAAU
....................-------.----..(((.((((((.................(((((.....)))))..(....)((((((((.-..)))))).)))))))).).)).... ( -23.20)
>DroEre_CAF1 11612 119 - 1
AGUAAUGCCCCCCGUCUCCCGUCACCCGCCAACCGCCACCCACAAAACUAGCCCACGCAAAGCCAUUAAAAAUGCCCUGGAAACGAAACGAUU-UUAUCAUUAACUGUGGGUGUGCAAAU
..................................((((((((((......((....))........(((((.((...((....))...)).))-)))........)))))))).)).... ( -21.10)
>DroYak_CAF1 13675 107 - 1
AGUAAGUACCCCGUACUCC-------------CCGCCACCCAUAAAACUUACCCACGCAAAGCCAUUAAAAAUGCCCUGGAAACGAAAUGAUUUUUAUCAUUAUCUGUGGGUGUGCAAAU
.(..(((((...)))))..-------------).((((((((((........(((.(((.............)))..)))....((((((((....)))))).)))))))))).)).... ( -25.12)
>consensus
AGUAAUGCCCCCCGUCACCC_______G____CCGCCACCCACAAAACUAACCCACGCAAAGCCAUUAAAAAUGCCCUGGAAACGAAAUGAUU_UUAUCAUUAUCUGUGGGUGUGCAAAU
..................................((((((((((.................(((((.....))))).((....)).((((((....))))))...)))))))).)).... (-21.51 = -22.32 +   0.81)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:35:10 2006