Locus 7263

Sequence ID X_DroMel_CAF1
Location 18,107,395 – 18,107,501
Length 106
Max. P 0.598492
window11897

overview

Window 7

Location 18,107,395 – 18,107,501
Length 106
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 81.88
Mean single sequence MFE -31.77
Consensus MFE -27.54
Energy contribution -26.85
Covariance contribution -0.69
Combinations/Pair 1.17
Mean z-score -1.40
Structure conservation index 0.87
SVM decision value 0.13
SVM RNA-class probability 0.598492
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18107395 106 + 22224390
---GCGCCAUUUCUCGCAGUGCACUGUGCCUUUGAUGGUCGCUCCAUAUGCAUCCAUCUUCCAUAUCUCCGCCAC-----C------CUCCCCUCGGCCAAUGCUCCUGGUGGUGGUGUG
---((((((((...(((((....))))).....))))).)))...........................((((((-----(------..((....(((....)))...)).))))))).. ( -30.60)
>DroSec_CAF1 15820 109 + 1
AUGGCGCCAUUUCUCGCAGUGCACUGUGCCUUUGAUGGUCGCUCCAUAUGCAUCCAUCUUCCAUCCCUCCGCUGC-----C------CUCUCCUUGGCCAAUGCUCCUGGUGGUGGUGCG
...((((((.....(((((....))))).....(((((..((.......))..)))))..(((((.....((.((-----(------........)))....))....))))))))))). ( -33.00)
>DroEre_CAF1 13621 120 + 1
AUGGCGCUAUUUCUCGCAGUGCACUGUGCCUUUGAUGGUCGCUCCAUAUGCAUCCAUCUUCCAGCUCCCCCCCCCCCCUCCCCGCAACCCCCCUCGGCCAACGCUCCUGGUGGUAGUGCG
..((.(((......(((((....))))).....(((((..((.......))..)))))....))).))..............((((...((((..(((....)))...)).))...)))) ( -31.20)
>DroYak_CAF1 15613 110 + 1
AUGGCGCCAUUUCUCGCAGUGCACUCUGCCUUUGAUGGUCGCUCCAUAUGCAUCCAUCUUCC------UCACCCCACCUCCCC----CCCCUCUCGACCAACGCUCCUGGUGGUGGCGCG
...((((((......((((......))))....(((((..((.......))..)))))....------.....(((((.....----.....................))))))))))). ( -32.27)
>consensus
AUGGCGCCAUUUCUCGCAGUGCACUGUGCCUUUGAUGGUCGCUCCAUAUGCAUCCAUCUUCCAUCUCUCCGCCCC_____C______CCCCCCUCGGCCAACGCUCCUGGUGGUGGUGCG
...((((((((...(((((....))))).....(((((..((.......))..)))))......................................((((.......)))))))))))). (-27.54 = -26.85 +  -0.69)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:34:34 2006