| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 18,105,848 – 18,105,990 |
| Length | 142 |
| Max. P | 0.990313 |
| Location | 18,105,848 – 18,105,957 |
|---|---|
| Length | 109 |
| Sequences | 3 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 94.50 |
| Mean single sequence MFE | -41.64 |
| Consensus MFE | -41.05 |
| Energy contribution | -40.07 |
| Covariance contribution | -0.99 |
| Combinations/Pair | 1.16 |
| Mean z-score | -2.75 |
| Structure conservation index | 0.99 |
| SVM decision value | 2.21 |
| SVM RNA-class probability | 0.990313 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 18105848 109 - 22224390 GCUGCUCCAGCGGCUUCCGCUGCAAACUGGCAAUAUUGUUGCAUUGUUAUUCUUAUUGUUAUUCCUUGGCCCCAAAAACAGAGGAAUAGCGGUGUGGGGCAGUGGCUGA ((((((((((((((....))))).(((..(((((...)))))...))).....((((((((((((((.............)))))))))))))))))))))))...... ( -41.62) >DroSec_CAF1 14313 109 - 1 GCUGCUCCAGCGGCUUCCGCUGCAAACUGGCAAUAUUGUUGCAUUGUUAUUCUUAUUGUUAUUCCUUGGCCCCAAAAGCAGAGGAGUAGCGGUGUGGGGCAGUGGCUGA ((((((((((((((....))))).(((..(((((...)))))...))).....((((((((((((((.((.......)).)))))))))))))))))))))))...... ( -45.00) >DroEre_CAF1 11959 108 - 1 GCUGCUCCGGCAGCUUCCGCUGCAAACUGGCAAUAUUGUUGCAUUGUUAUUCUUAUUGUUAUUCCCUGGCCCCAAA-ACGGAGGAGUAGCCGUGUGGGGUAGUGGCUGA (((((....)))))..(((((((.(((..(((((...)))))...)))...(((((.(((((((((((........-.))).))))))))...)))))))))))).... ( -38.30) >consensus GCUGCUCCAGCGGCUUCCGCUGCAAACUGGCAAUAUUGUUGCAUUGUUAUUCUUAUUGUUAUUCCUUGGCCCCAAAAACAGAGGAGUAGCGGUGUGGGGCAGUGGCUGA ((((((((((((((....))))).(((..(((((...)))))...))).....(((((((((((((((..........))).)))))))))))))))))))))...... (-41.05 = -40.07 + -0.99)
| Location | 18,105,882 – 18,105,990 |
|---|---|
| Length | 108 |
| Sequences | 4 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 96.47 |
| Mean single sequence MFE | -31.30 |
| Consensus MFE | -31.45 |
| Energy contribution | -31.20 |
| Covariance contribution | -0.25 |
| Combinations/Pair | 1.03 |
| Mean z-score | -1.45 |
| Structure conservation index | 1.00 |
| SVM decision value | 0.16 |
| SVM RNA-class probability | 0.612601 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 18105882 108 - 22224390 -CUGCCUGUUUGGCUUAGCUGUUGAAAAUGGGGAGCUGCUCCAGCGGCUUCCGCUGCAAACUGGCAAUAUUGUUGCAUUGUUAUUCUUAUUGUUAUUCCUUGGCCCCAA -..(((.....((..((((....(((....(((((((((....)))))))))......(((..(((((...)))))...))).))).....))))..))..)))..... ( -30.90) >DroSec_CAF1 14347 108 - 1 -CUGCCUGUUUGGCUUAGCUGUUGAAAAUGGGGAGCUGCUCCAGCGGCUUCCGCUGCAAACUGGCAAUAUUGUUGCAUUGUUAUUCUUAUUGUUAUUCCUUGGCCCCAA -..(((.....((..((((....(((....(((((((((....)))))))))......(((..(((((...)))))...))).))).....))))..))..)))..... ( -30.90) >DroEre_CAF1 11992 109 - 1 UUUGCCUGUUUGGCUUAGCUGUUGAAAAUGGGGAGCUGCUCCGGCAGCUUCCGCUGCAAACUGGCAAUAUUGUUGCAUUGUUAUUCUUAUUGUUAUUCCCUGGCCCCAA ...(((.....((..((((....(((....(((((((((....)))))))))......(((..(((((...)))))...))).))).....))))..))..)))..... ( -31.00) >DroYak_CAF1 13917 108 - 1 -UUGCCUGUUUGGCUUAGCUGUUGAAAAUGGGGAGCUGCUCCAGCAGCUUCCGCCGCAAACUGGCAAUAUUGUUGCAUUGUUAUUCUUAUUGUUAUUCCUUGGCUCCAA -..(((.....((..((((....((((((((((((((((....)))))))))((((.....))))..........))))....))).....))))..))..)))..... ( -32.40) >consensus _CUGCCUGUUUGGCUUAGCUGUUGAAAAUGGGGAGCUGCUCCAGCAGCUUCCGCUGCAAACUGGCAAUAUUGUUGCAUUGUUAUUCUUAUUGUUAUUCCUUGGCCCCAA ...(((.....((..((((....(((....(((((((((....)))))))))......(((..(((((...)))))...))).))).....))))..))..)))..... (-31.45 = -31.20 + -0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:34:31 2006