Locus 723

Sequence ID X_DroMel_CAF1
Location 1,984,785 – 1,984,905
Length 120
Max. P 0.951126
window1163

overview

Window 3

Location 1,984,785 – 1,984,905
Length 120
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 92.22
Mean single sequence MFE -48.03
Consensus MFE -45.07
Energy contribution -44.97
Covariance contribution -0.10
Combinations/Pair 1.14
Mean z-score -2.35
Structure conservation index 0.94
SVM decision value 1.41
SVM RNA-class probability 0.951126
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1984785 120 + 22224390
GGAACUGCAAGUACCCGGCUUAGCUGUCUGAAAGAUGGCGCCAGAGGCGGAGAGGGCUGCCUGCAGAGCACUAGAGGUAGCUAUUCCGGCUGGCGUCGUUGACGAAGAAACUGAGAAGGG
.............(((..(((((...(((....(((((((((((...(((((..((((((((..((....))..)))))))).))))).))))))))))).....)))..)))))..))) ( -52.00)
>DroEre_CAF1 7921 120 + 1
CGAACUGCAAGCACUCGGCUUAGCUGUCUGAAAGAUGCCGCCAGAGGCCGAGAGAGCUGCCUGCAGGGCACUAGAGGUAGCUAUUCCGGCUGGCGUCGUUGUCGAAGAAACUGAGAAGGG
.............(((..(((((...(((....((((.(((((...((((.(((((((((((..((....))..)))))))).)))))))))))).)))).....)))..)))))..))) ( -45.20)
>DroYak_CAF1 18662 120 + 1
GGAACUGCAAGCACCGGGCUUAGCCGUCUGAAAAAUGGCGCCGGAGGCGGAGAGAGCUGCUUGCAGGGCACUAGAGGUAGCUAUUCCGGCUGGCGUCGUUGUUGAAGAAACUGAGAAGGG
.............((...(((((...(((....(((((((((((...(((((..((((((((..((....))..)))))))).))))).))))))))))).....)))..)))))..)). ( -46.90)
>consensus
GGAACUGCAAGCACCCGGCUUAGCUGUCUGAAAGAUGGCGCCAGAGGCGGAGAGAGCUGCCUGCAGGGCACUAGAGGUAGCUAUUCCGGCUGGCGUCGUUGUCGAAGAAACUGAGAAGGG
.............(((..(((((...(((....(((((((((((...(((((..((((((((..((....))..)))))))).))))).))))))))))).....)))..)))))..))) (-45.07 = -44.97 +  -0.10)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:52:05 2006