Locus 7219

Sequence ID X_DroMel_CAF1
Location 18,063,254 – 18,063,374
Length 120
Max. P 0.584791
window11800

overview

Window 0

Location 18,063,254 – 18,063,374
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 87.86
Mean single sequence MFE -36.43
Consensus MFE -29.23
Energy contribution -29.90
Covariance contribution 0.67
Combinations/Pair 1.00
Mean z-score -1.92
Structure conservation index 0.80
SVM decision value 0.10
SVM RNA-class probability 0.584791
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18063254 120 - 22224390
AAACCAAGAGCACACUGCCCAGAAACCUUAGCAGGCCAGGACUCAGCACUCAGGACCCAGCAAUGCCGAAUGUGGAACAUGCUGCGUCAAGGCAUUUUUGUGGCCAAAGUCGCAAAGUCU
..............((((..((....))..))))....(((((..(((((..((.(((((.((((((..(((..(......)..)))...)))))).))).))))..))).))..))))) ( -35.60)
>DroSec_CAF1 1170 106 - 1
AAACCCAGGGCACACUGCCCAGUAGCCCUACCAGGCCAGGAC--------------UCAGCAAUGCCGAAUGUGGAACAUGCUGCGUCAAGGCAUUUUUGUGGCCAAAGUCGCAAAGUCU
......(((((..(((....))).))))).....(((..(((--------------.(((((...(((....)))....))))).)))..)))..(((((((((....)))))))))... ( -37.10)
>DroSim_CAF1 4257 106 - 1
AAACCCAGGGCACACUGCCCAGUAGCCCUACCAGGCCAGGAC--------------CCAGCAAUGCCGAAUGUGGAACAUGCUGCGUCAAGGCAUUUUUGUGGCCAAAGUCGCAAAGUCU
......(((((..(((....))).))))).....(((..(((--------------.(((((...(((....)))....))))).)))..)))..(((((((((....)))))))))... ( -36.60)
>consensus
AAACCCAGGGCACACUGCCCAGUAGCCCUACCAGGCCAGGAC______________CCAGCAAUGCCGAAUGUGGAACAUGCUGCGUCAAGGCAUUUUUGUGGCCAAAGUCGCAAAGUCU
.......((((.....))))....(((......)))..((((...................((((((..(((..(......)..)))...))))))((((((((....)))))))))))) (-29.23 = -29.90 +   0.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:33:11 2006