Locus 7209

Sequence ID	X_DroMel_CAF1
Location	18,055,421 – 18,055,541
Length	120
Max. P	0.989660

overview

Window 6

Location	18,055,421 – 18,055,541
Length	120
Sequences	3
Columns	120
Reading direction	forward
Mean pairwise identity	98.33
Mean single sequence MFE	-50.67
Consensus MFE	-49.42
Energy contribution	-49.20
Covariance contribution	-0.22
Combinations/Pair	1.03
Mean z-score	-3.53
Structure conservation index	0.98
SVM decision value	2.17
SVM RNA-class probability	0.989660
Prediction	RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18055421 120 + 22224390
UGUGGGCGCUUGGGGAAAAGCUGAGCACUCGAACCGAGCACCUGGCUGUGAGCUGCGGUGUGCGGUGAGUGCGGUGCGACACAAAACAUGACACAAACUUAAUUUCCCCAAGGCACAACA
.((..((.((((((((((.((...((((((..((((.(((((((((.....)))).))))).))))))))))...))....((.....))............))))))))))))...)). ( -50.10)
>DroSec_CAF1 121 120 + 1
UGUUGGCGCUUGGGGAAAAGCUGAGCACUCGAACCGAGCACCUGGCUGCGAGCUGCGGUGUGUGGUGAGUGCGGUGCGACACAAAACAUGACACAAACUUAAUUUCCCCAAGGCACAACA
.((((((.((((((((((.((...((((((..((((.(((((((((.....)))).))))).))))))))))...))....((.....))............)))))))))))).)))). ( -51.80)
>DroSim_CAF1 120 120 + 1
UGUGGGCGCUUGGGGAAAAGCUGAGCACUCGAACCGAGCACCUGGCUGCGAGCUGCGGUGUGCGGUGAGUGCGGUGCGACACAAAACAUGACACAAACUUAAUUUCCCCAAGGCACAACA
.((..((.((((((((((.((...((((((..((((.(((((((((.....)))).))))).))))))))))...))....((.....))............))))))))))))...)). ( -50.10)
>consensus
UGUGGGCGCUUGGGGAAAAGCUGAGCACUCGAACCGAGCACCUGGCUGCGAGCUGCGGUGUGCGGUGAGUGCGGUGCGACACAAAACAUGACACAAACUUAAUUUCCCCAAGGCACAACA
.((..((.((((((((((.((...((((((..((((.(((((((((.....)))).))))).))))))))))...))....((.....))............))))))))))))...)). (-49.42 = -49.20 +  -0.22)

alignment

secondary structure

dotplot

Window 7

Location	18,055,421 – 18,055,541
Length	120
Sequences	3
Columns	120
Reading direction	reverse
Mean pairwise identity	98.33
Mean single sequence MFE	-49.63
Consensus MFE	-47.47
Energy contribution	-47.80
Covariance contribution	0.33
Combinations/Pair	1.00
Mean z-score	-3.72
Structure conservation index	0.96
SVM decision value	1.98
SVM RNA-class probability	0.984753
Prediction	RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18055421 120 - 22224390
UGUUGUGCCUUGGGGAAAUUAAGUUUGUGUCAUGUUUUGUGUCGCACCGCACUCACCGCACACCGCAGCUCACAGCCAGGUGCUCGGUUCGAGUGCUCAGCUUUUCCCCAAGCGCCCACA
.((.(.((((((((((((...((((((((.(((.....))).))))..((((((((((..((((...((.....))..))))..))))..))))))..)))))))))))))).))).)). ( -49.40)
>DroSec_CAF1 121 120 - 1
UGUUGUGCCUUGGGGAAAUUAAGUUUGUGUCAUGUUUUGUGUCGCACCGCACUCACCACACACCGCAGCUCGCAGCCAGGUGCUCGGUUCGAGUGCUCAGCUUUUCCCCAAGCGCCAACA
.((((.((((((((((((...((((((((.(((.....))).))))..(((((((((...((((...((.....))..))))...)))..))))))..)))))))))))))).)))))). ( -50.10)
>DroSim_CAF1 120 120 - 1
UGUUGUGCCUUGGGGAAAUUAAGUUUGUGUCAUGUUUUGUGUCGCACCGCACUCACCGCACACCGCAGCUCGCAGCCAGGUGCUCGGUUCGAGUGCUCAGCUUUUCCCCAAGCGCCCACA
.((.(.((((((((((((...((((((((.(((.....))).))))..((((((((((..((((...((.....))..))))..))))..))))))..)))))))))))))).))).)). ( -49.40)
>consensus
UGUUGUGCCUUGGGGAAAUUAAGUUUGUGUCAUGUUUUGUGUCGCACCGCACUCACCGCACACCGCAGCUCGCAGCCAGGUGCUCGGUUCGAGUGCUCAGCUUUUCCCCAAGCGCCCACA
.((.(.((((((((((((...((((((((.(((.....))).))))..((((((((((..((((...((.....))..))))..))))..))))))..)))))))))))))).))).)). (-47.47 = -47.80 +   0.33)

alignment

secondary structure

dotplot

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:32:50 2006