| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 17,997,616 – 17,997,713 |
| Length | 97 |
| Max. P | 0.665282 |
| Location | 17,997,616 – 17,997,713 |
|---|---|
| Length | 97 |
| Sequences | 3 |
| Columns | 97 |
| Reading direction | reverse |
| Mean pairwise identity | 95.19 |
| Mean single sequence MFE | -28.17 |
| Consensus MFE | -27.29 |
| Energy contribution | -26.63 |
| Covariance contribution | -0.66 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.58 |
| Structure conservation index | 0.97 |
| SVM decision value | 0.28 |
| SVM RNA-class probability | 0.665282 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 17997616 97 - 22224390 GAGGGUUAGUUUAAUGUCCAAUUGAUUGGCAUGUCAAUGGACAGGACAAAUAUUGACGCAGGCCAGCAGAAAUUGUUCAUACGACCCGUUGGCAAUA ..(.((((((....(((((..((.(((((....))))).))..)))))...)))))).)..((((((.(...((((....)))).).)))))).... ( -28.00) >DroSec_CAF1 9656 97 - 1 GAGGGUUAGUUUAAUGUCCCAUUGAUUGGGAUGUCAAUGGACAGGACAAAUAUUGGCGCCGGCCAGCAGAAAUUGUUCAUACGACCCGUUGGCAAUA ..(((((.......(((((.((((((......)))))))))))((((((.(.(((((....))))).)....))))))....))))).......... ( -30.10) >DroEre_CAF1 10534 97 - 1 GGGGGUUAGUUUAAUGUCCAAUUGAUUGGCAUGUCAAUGGACAGGGCAAAUAUUGACGCAGGCCGGCAGAAAUUGUUCAUACGACCCGUUGGCAAUA ..(.((((((....(((((..((.(((((....))))).))..)))))...)))))).)..((((((.(...((((....)))).).)))))).... ( -26.40) >consensus GAGGGUUAGUUUAAUGUCCAAUUGAUUGGCAUGUCAAUGGACAGGACAAAUAUUGACGCAGGCCAGCAGAAAUUGUUCAUACGACCCGUUGGCAAUA ..(.((((((....(((((..((.(((((....))))).))..)))))...)))))).)..((((((.(...((((....)))).).)))))).... (-27.29 = -26.63 + -0.66)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:32:11 2006