Locus 7169

Sequence ID X_DroMel_CAF1
Location 17,978,559 – 17,978,679
Length 120
Max. P 0.943501
window11713

overview

Window 3

Location 17,978,559 – 17,978,679
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 82.71
Mean single sequence MFE -32.94
Consensus MFE -17.56
Energy contribution -17.76
Covariance contribution 0.20
Combinations/Pair 1.13
Mean z-score -2.99
Structure conservation index 0.53
SVM decision value 1.34
SVM RNA-class probability 0.943501
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17978559 120 + 22224390
AGCUCACAAAGUGUACGAGAUACAGUGCUGGGCAGCAGUAUCUGCUUAGUGGUAGAUAGUAUCUACUAGAUACUUUAUCCGCAAAGGUGUCUAAAAGUAUGCAGUGAAAGAUAUUACUUC
...((((...((((((.((((((..((((....)))).((((((((....))))))))))))))..((((((((((.......))))))))))...)))))).))))............. ( -36.70)
>DroSec_CAF1 9470 105 + 1
AGCUCACAAAGUGUACGAGAUACAGUGUUGGGCAACAGUAUCUGCUUGGUGGUAG--------------AUACUUUAUCUUCAAAGGUGUCUAAAAGUAUGCAGUGAAAGAUA-UACUUG
...((((...((((((.((((((..((..((..((.((((((((((....)))))--------------)))))))..)).))...))))))....)))))).))))......-...... ( -30.80)
>DroSim_CAF1 9167 106 + 1
AGCUCACAAAGUGUACGCGAUACAGUGUUGGGCAACAGUAUCUGCUUGGUGGUAG--------------AUACUUUAUCUUCAAAGGUGUCUAAAAGUAUGCAGUGAAAGAUAUUACUUG
.(((((((..((((.....))))..)).)))))...((((((((((....)))))--------------))))).((((((((...(((((.....).))))..)).))))))....... ( -28.50)
>DroEre_CAF1 10772 103 + 1
AGCUCACAAAGUGUACGAGAUACAGUGCUGGCCAGCAGUAUCUGCAU---GGUAG--------------AUAUUUUAACGGCCAAGGUGUCUAAAAGUAUGCUGUGAAAGCUAUUACAUU
((((..((.(((((((.((((((.....(((((...(((((((((..---.))))--------------))))).....)))))..))))))....))))))).))..))))........ ( -34.50)
>DroYak_CAF1 8521 104 + 1
AGCUCGCAAAGUGUACGAGAUACAGUGCUGGGCAGCAGUAUCUGCAUUCUGGUAG--------------AUACUUUAUCUGCAACAGUG--UAGAACUGUGCAGUAAAAGAUAUUACAAU
.(((((((..((((.....))))..))).)))).(((((.((((((((...((((--------------(((...)))))))...))))--)))))))))...((((......))))... ( -34.20)
>consensus
AGCUCACAAAGUGUACGAGAUACAGUGCUGGGCAGCAGUAUCUGCUUGGUGGUAG______________AUACUUUAUCUGCAAAGGUGUCUAAAAGUAUGCAGUGAAAGAUAUUACUUG
...((((...(..(((.(((((((.((((....)))).)..((((......))))...............................))))))....)))..).))))............. (-17.56 = -17.76 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:31:53 2006