Locus 7161

Sequence ID X_DroMel_CAF1
Location 17,973,108 – 17,973,217
Length 109
Max. P 0.550301
window11701

overview

Window 1

Location 17,973,108 – 17,973,217
Length 109
Sequences 4
Columns 118
Reading direction reverse
Mean pairwise identity 86.67
Mean single sequence MFE -22.03
Consensus MFE -14.84
Energy contribution -15.09
Covariance contribution 0.25
Combinations/Pair 1.12
Mean z-score -1.58
Structure conservation index 0.67
SVM decision value 0.03
SVM RNA-class probability 0.550301
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17973108 109 - 22224390
UUCAUGCGCUCAGUGCAUUCGGUAAAUUUAACUCAAUUGAUUGAAUUACAAUCAAAUUGUCAUUUUCAUUAUAUGCAA--AAAUGGUAUACAUUUUGG-------UUCAUGUUAAAAA
..((((.(((...(((((..(((.((.......((((((((((.....))))).))))).....)).)))..)))))(--(((((.....))))))))-------).))))....... ( -18.60)
>DroSec_CAF1 4095 117 - 1
UUCAUGCGCUCAGUGCAUUCGGUAAAUAUAACUCAAUUGAUUGAAUUACAAUCAAAUUGACAUUUUCAUUAUAUACAAC-AAAUGGUGUACAUUUUGUUAUGUUAUUCGAGUUAAAAA
...((((((...))))))..........((((((..(((((((.....)))))))..((((((...((..((.((((.(-....).)))).))..))..))))))...)))))).... ( -25.00)
>DroSim_CAF1 3769 117 - 1
UUCAUGCGCUCAGUGCAUUCGCUAAAUUUAACUCAAUUGAUUGAAUUACAAUCAAAUUGACAUUUUCAUUAUAUACAAC-AAAUGGUGUACAUUUUGUUAUGUUAUUCGAGUUAAAAA
...((((((...))))))........((((((((..(((((((.....)))))))..((((((...((..((.((((.(-....).)))).))..))..))))))...)))))))).. ( -26.80)
>DroYak_CAF1 3201 118 - 1
UUCAUGCGCUCAGUGCAUUCGAUAAAUUUAACUCAAUUGAUUGAAUUAUAAUAAAAUUGACGGUUUCGCUAUAUACAAAAAACUGCUGUUCGUAUUGAUACGUUUUUCGAGUUAAAAA
...((((((...))))))........((((((((((((.....))))...........((((...(((.(((..(((.........)))..))).)))..))))....)))))))).. ( -17.70)
>consensus
UUCAUGCGCUCAGUGCAUUCGGUAAAUUUAACUCAAUUGAUUGAAUUACAAUCAAAUUGACAUUUUCAUUAUAUACAAC_AAAUGGUGUACAUUUUGUUAUGUUAUUCGAGUUAAAAA
...((((((...))))))........((((((((..(((((((.....))))))).....(((((...............))))).......................)))))))).. (-14.84 = -15.09 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:31:41 2006