Locus 7153

Sequence ID X_DroMel_CAF1
Location 17,956,656 – 17,956,761
Length 105
Max. P 0.521640
window11682

overview

Window 2

Location 17,956,656 – 17,956,761
Length 105
Sequences 5
Columns 106
Reading direction forward
Mean pairwise identity 75.67
Mean single sequence MFE -16.46
Consensus MFE -12.16
Energy contribution -12.28
Covariance contribution 0.12
Combinations/Pair 1.14
Mean z-score -1.04
Structure conservation index 0.74
SVM decision value -0.02
SVM RNA-class probability 0.521640
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17956656 105 + 22224390
ACACCAACAUCAUCUUCCCUCCAUUUCCAUCCGAUUCCCAUCUCGAACUUCUGGCACAGCCGUGUUCCAAUUGAUAAGCAAGUGCUGCACUCCAGGUGCUUGUUA-
........((((....................(((....)))..((((...((((...)))).))))....)))).((((((..((........))..)))))).- ( -18.50)
>DroSec_CAF1 18829 91 + 1
--------------UCCCCUCCAUUUCCAUCCGAUUCACUUCUCCAACUUCUGGCACAGCCGUGUUCCAAUUGAUAAGCAAGUGCUGCACUCCAGGUGCUUGUUA-
--------------.................((((((((..(((((.....)))...))..)))....)))))...((((((..((........))..)))))).- ( -14.70)
>DroSim_CAF1 8083 91 + 1
--------------UCCCCUCCAUUUCCAUCCGAUUCACUUCUCCAACUUCUGGCACAGCCAUGUUCCAAUUGAUAAGCAAGUGCUGCACUCCAGGUGCUUGUUA-
--------------.....................................(((.(((....))).))).......((((((..((........))..)))))).- ( -15.40)
>DroEre_CAF1 16318 89 + 1
--------------GUAUCCCCAU---CAUCCACUUCCCCUCUCCAACUUUUGGCACAGUCGUGCUCCAGUUGAUACCCAAAUGCCGCACUCCAGGUGCCCAGAUG
--------------.......(((---(................(((((...(((((....)))))..))))).............((((.....))))...)))) ( -18.90)
>DroYak_CAF1 16554 88 + 1
--------------GCUUCUCCAU---CAUCCCC-UCCAUUCUCCAACUUUUGGCCCAGUCGUGCUCCAAAUGAUAACCAAGUGCCGCACUCCAGGUGCCCAGAAA
--------------..........---.......-.............(((((((((.(..((((..((..((.....))..))..))))..).)).).)))))). ( -14.80)
>consensus
______________UCCCCUCCAUUUCCAUCCGAUUCCCUUCUCCAACUUCUGGCACAGCCGUGUUCCAAUUGAUAAGCAAGUGCUGCACUCCAGGUGCUUGUUA_
....................................................(((((....((((..((.(((.....))).))..)))).....)))))...... (-12.16 = -12.28 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:31:25 2006